BIT: BioInformatics Tools أنظمة خادمة وأدوات في المعلوماتية الحيوية

Bioinformatics and Structural Biology - Tools & Services
		Relevant Publications & Communications: Dates: 2020 - 2019 - 2018 - 2017 - 2015 - 2014 - 2013 - 2012 - 2011 - 2009 - 2006 - 2005 - 2004 - 2003 - 2000 - 1999 - 1998 - 1997 See also: 2020 - Abdelkrim Rachedi Mutations in the SARS-CoV-2 complete genome sequences from strains isolated in Blida province, Algeria. JNBGP 2020: Journees Nationales virtuelles de bioinformatique: Genomique et proteomique - USDB, October 09-10, 2020 The contribution included the Viruses data Integration Database 2019 - Abdellahi Ould Ahmed Salem & Abdelkrim Rachedi^* Structural Targets Annotation Database - STAD & PR-Proteins selected targets. The International Conference on Biotechnology and Cancer, December 07-08, 2019 2019 - Soumeya KHERIS, Mokhtar BENREGUIEG and Abdelkrim RACHEDI* Bacterial Antibiotic Resistance Investigation Database - BARID. International Bioinformatics Day, JIBioinfo2019, 05 Nov. 2019 2018 - Abdellahi Ould Ahmed Salem, Mira Raimes, Aicha Bessaih, Mohamed Brahimi, Mohamed Amine Deghem, Mehdi Zein and Abdelkrim Rachedi* Structural & Functional Motifs in Metabolic Enzymes . A new set of Functional Motifs. 2^eme Colloques International, Biosciences 2108 "Genie Enzymatique et Production de Metabolites", 28-29 October2018, Oran, Algeria -> See: - Abstract -> - Conference Book: \|.1.\| or \|.2.\| 2018 - A. Rachedi, A. Mohammedi and A. Boukhalfa A Phytoecological Database for Annotating Flora in Region of Maamora - Saida, Algeria. Proceedings: International Seminar On Medicinal Plants (SIPM . January 2018), page 23., 2018, Al-Oued, Algeria ->See: Abstract 2017 - SALEM Abdellahi, RACHEDI Abdelkrim* Structural/Functional Motifs in the Enzymes of the Krebs Cycle, 1ER SEMINAIRE DE BIOINFORMATIQUE, April 04-06, 2017, Blida, Algeria. ->Explore: Citric Acid Cycle Binding Structural & Functional Motifs 2015 - Abdelkrim Rachedi. STAD the Structural Targets Annotation Database, Proceedings of the 08th International Biocuration Conference, From Big Data to Big Discovery April 23-26, 2015, Beijing, China. ->Find in Biocuration 2015 book 2014 - A Boukhalfa, A Mohammedi and A Rachedi An online Phytoecological Database and Exploration System for Flora in the region of Maamora, Saida., La Dynamique et la Valorisation des Ecocystemes Arides et Semi-arides dans un evironnement Changeant (DVEEC), Proceedings, page 59., 2014 2013 - Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings of the 11th International Conference on Biology and Synchrotron Radiation, 8 - 11 September 2013, Humburg, Germany. ( A conference Report has been published in the Journal Synchrotron Radiation, Volume 21, Part 1, Pages 280-282 January 2014, ->Find in Journal Synchrotron Radiation) 2013 - Abdelkrim Rachedi, Khuphukile Madida. NALD: Nucleic Acids and Ligands Database, Modeling Approaches and Algorithms for Advanced Computer Applications (Springer) 2013, 488: 329-336 ->Find in SpringerLink 2013 - Abdelkrim Rachedi. Vers une Base-de-donnees et System d'Exploitation en ligne de la Flore en Algerie (http://www.bioinformaticstools.org/fina). La Journee Scientifique Sur l'Eau et l'Environnement, 30 Juin 2013, Universite Dr. Tahar Moulay,Saida, Algerie. 2012 - Abdelkrim Rachedi and Wits University (Johannesburg) SYSTEMS AND METHODS FOR USE IN MOLECULAR DRUG DESIGN, Patent publication (WO2012/12043), 13 Sept. 2012. ->Find in WIPO 2012 - Abdelkrim Rachedi Bioinformatics in Diseases (like cancer, HIV, Malaria ... etc). International Seminar ' Cancer, Cellular Stress and Bioactive Substances' CSCSB, 23-24 September 2012 - Jijel, Algeria 2011 - Abdelkrim Rachedi, Khuphukile Madida. NALD: Nucleic Acids and Ligands Database; Ligand Binding Motifs, Binding Classes & Disease Links, 2nd ISCB Africa ASBCB Conference on Bioinformatics, March 9-11, 2011 - CapeTown, South Africa. 2011 - Abdelkrim Rachedi. Annotation of structural targets in SouthAfrica; the STAD database, 2nd ISCB Africa ASBCB Conference on Bioinformatics, March 9-11, 2011 - CapeTown, South Africa. 2009 - Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings for the Second Southern African Bioinformatics Workshop, 11th - 12th, Johannesburg, October 2009 - Johannesburg, South Africa. 2006 - Albeck S, .., Rachedi A et.al. SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallogr D Biol Crystallogr. 2006 Oct. ->Find in PubMed 2005 - (in relation to the SSFS system ) Golovin A., Dimitropoulos D., Oldfield T., Rachedi A. and Henrick (2005) MSDsite: A Database Search and Retrieval System for the Analysis and Viewing of Bound Ligands and Active Sites. PROTEINS: Structure, Function, and Bioinformatics 58(1): 190-9. ->Find in PubMed 2004 - A. Golovin, .., A. Rachedi et. al. E-MSD: an integrated data resource for bioinformatics, Nucleic Acids Research, 32 (Database issue), D211-D216, 2004. 2003 - Boutselakis, .., Rachedi, A. et. al. E-MSD: The European Bioinformatics Institute Macromolecular Structure Database. Nucleic Acids Research, 31, 458-462, 2003. 2000 - Abdelkrim Rachedi, Michael Rebhan and Hong Xue. GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12. ->Find in PubMed GABAagent and 3D-GDD databases have been featured under the NetWatch category (GABAing) in Science 287:5455 on February 11, 2000. See PDF: GABAing See also: news0527.pdf: HKUST Univ. press release about the GABAagent system. 1999 - Abdelkrim Rachedi, Michael Rebhan and Hong Xue. Internet-based Integrated Retrieval Information System for GABA receptors. Society for Neuroscience Abstracts. Vol.25, Part 2, page 1809, Oct. 1999 - Miami Beach, Florida, United States. 1999 - Khoo ASB, Balraj P, Rachedi A, Chin CN, Volpi L. A novel complex mutation of the OTC (Ornithine Transcarbamylase) Gene in a Malaysian Pedigree. Human Mutation. 1999 Nov; 14(5): 448. 1998 - Khoo ASB, Balraj P, Rachedi A, Volpi L., Chin CN. Clinical Correlation of a Novel Mutant Ornithine Transcarbamylase (OTCase) Homology Model. In Proceedings of the 10th National Biotechnology Seminar: Biotechnology towards the next millenium, pages 26-27. SIRIM Berhad, Malaysia, 27 & 28 October 1998. See link to the Proceedings: https://library.mosti.gov.my/cgi-bin/koha/opac-MARCdetail.pl?biblionumber=19413 See also: Clinical Correlation of a Novel Mutant Ornithine Transcarbamylase (OTCase) Homology Model 1998 - Khoo ASB, Balraj P, Rachedi A, Volpi L., Tan SK, Lim PKC, Chin CN. Molecular Genetic Investigations of a family with multiple early neonatal deaths. In Abstracts of the First Scientific Seminar of the National Institutes of Health, Ministry of Health, Malaysia: Research in the New Millenium, Page 45. Kuala Lumpur, Malaysia, 30-31 October 1998. 1997 - A. Rachedi, C.E. Sansom, C.R. Groom, J. Thillet, R. Griffin & A.J. Geddes. The Structure of Mouse Dihydrofolate Reductase in Ternary Complex with NADPH and the Lipophilic Antifolate, Methylbenzoprim. In Proceedings of the 9th National Biotechnology Seminar: Positioning National R & D in Biotechnology for Global Competitiveness, pages 96-102. Penang, Malaysia, 23-26 November 1997. See link to the Proceedings: https://library.mosti.gov.my/cgi-bin/koha/opac-MARCdetail.pl?biblionumber=19469 Dates: 2020 - 2019 - 2018 - 2017 - 2015 - 2014 - 2013 - 2012 - 2011 - 2009 - 2006 - 2005 - 2004 - 2003 - 2000 - 1999 - 1998 - 1997 Timeline ... April 2017: CACFMS Structural/Functional Motifs In The Enzymes Of The Krebs Cycle, by the SBB group at UTM Univ., Saida, Algeria. More... September 2015: CUPID A new online under-developement system comes as a result of international collaboration project with Dept. of Cell and Molecular Biology, Uppsala University,Uppsala,Sweden. More... November 2014: FIMA A new online Phytoecological Database & Exploration System for Flora in the region of Maamora, Saida, created by the SBB group at UTM Univ., Saida, Algeria. More... September 2014: STAD updates; 2 new Targets by the SBB group at UTM Univ., Saida, Algeria. More... January 2014: DIRC a newly created bioinformatics service tool for creating database systems providing integrated data for a set of biology-related keywords. More... December 2013: STAD updates; 9 new 3D structures by UCT Univ., South Africa and 3 updated targets by UAE Univ., Morocco. More... November 2013: Neuro. updates; a new card module (5^th), News card (RSS feed), has been added to the Neuro system”. More... September 2013: STAD updates; new structural targets More... August 2013: Neuro. system now provides a 4^th card of search results called Videos card”. More... August 2013: STAD updates; 4 new 3D structures of the Amidase enzyme by the Strcutural Biology Group, UCT Univ., Capetown, South Africa. More... June 2013: Neuro. system now provides 3 cards of search results. These include “Integrated Data”, “Disease” and “Sites & Images” cards. More... May 2013: NALD Database & Methods published in Springer. More... April 2013: "Neuro." updates; a new bioinformatics resource More... February 2013: STAD updates; new structural targets More... September 2012: Patent publication (WO2012/12043) "SYSTEMS AND METHODS FOR USE IN MOLECULAR DRUG DESIGN" More... February 2011: STAD the first and only African contributor to the PSI TargetTrack More... Bioinformatics news ... Novel druggable space in human... Editorial: Structural bioinfor... 3 Decades of Bioinformatics Ad... AI-based analysis uncovers two... EPA Releases SeqAPASS Version ... Online PhD conferral Xiaosong ... Top Emerging Trends in Bioinfo... Structural bioinformatics anal... Artificial Intelligence and St... Advances in Cell Microscopy - ... Bioinformatics and COVID-19 th... Mass spectrometry-based proteo... The Limits of AlphaFold: High ... Big data unites all discipline... Douglas Theobald \| Faculty & R... Observation selection bias in ... C-Direct Detection NMR in Comb... wwPDB biocuration: on the fron... A paradigm shift in structural... PyUUL provides an interface be... Art as a tool for science - Na... New bioinformatics tool to ide... The effects of amino acid subs... MOE workshop scheduled for str... Bhattacharya lab ranks in top ... New tool identifies chromosoma... AlphaFold 3 Angst: Limited Acc... VCU professors join elite biom... StructureDistiller: Structural... Celebrating the Protein Data B... A scientifically accurate mode... Search for efficient inhibitor... Exploring the limitations of b... Double Dare: Exscientia Expand... Anna Tramontano 1957–2017 - ... Joe Greener appointed Group Le... Protein Data Bank Archives its... Bioinformatics: What is it? Wh... Is there a visualizer which co... Protein Data Bank: 100,000 str... John Wooley: In Memoriam - Uni... Exploring the Future of Bioinf... GlycoMinestruct: a new bioinfo... Andrew McLachlan (1935 – 202... Two New Papers Analyze in Deta... New Tool Used To Predict the B... Cyrus Chothia (1942 – 2019) ... Bio3D: New bioinformatics tool... Structural Biology And Molecul... A young researcher strives to ... New paper describes Google Col... Bio3D: New bioinformatics tool... Bio3D-web: New online tools fo... A Dummies’ Intro to Bioinfor... New CEITEC software provides a... Varanasi: IIT-BHU assistant pr... Revenue generation: We’ve re... NII Delhi Bioinformatics Proje... Top 20 Bioinformatics Research... National & International Conferences.. 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Tools, Databases & Services COVID-19 & Viruses Data Integration SARS-CoV-2 Variants, Genomes & Mutations Explorer Viruses Integration Database (Incl. SARS-CoV-2) Vr-β ^{[6], [8]} Bioinformatics Mobile Apps. FIMA Android vr 1.0 ^{[4.1], [4.2]} GABAagent Android vr 1.0 ^[6] Microbial Bioinformatics Research & Services BARID: Bacterial Antibiotic Resistance Investigation Database ^[7] Structural Bioinformatics Research & Services SSFS: Sequence, Structure and Function Server ^[1] STAD: Structural Targets Annotation Database ^{[2.1], [2.2], [2.3], [2.4], [2.5], [2.6]} - See also: NALD: Nucleic Acids and Ligands Database ^[3] Flora Annotation FIMA: Flora in Maamora, Saida, Algeria ^{[4.1], [4.2]} FINA: Flora in Algeria, Database ^[5] Data Intergation tools and databases DIRC: A system for creating data integrated databases and search tools for biology-related topics CUPID:Chaperone/Usher Pathway Identification Database GABAagent: A system for integrating data on GABA receptors ^[6] EblRsr: A resource system for integrating data on the Ebola Virus Disease and related topics. Genomics N2PR: Nucleic Acid Codes Translation to Proteins and Reverse
References ¹ 2005: Golovin A., Dimitropoulos D., Oldfield T., Rachedi A. and Henrick "MSDsite: A Database Search and Retrieval System for the Analysis and Viewing of Bound Ligands and Active Sites. PROTEINS: Structure, Function, and Bioinformatics 58(1): 190-9 2005" << Find in PubMed ⁸2020: Abdelkrim Rachedi Mutations in the SARS-CoV-2 complete genome sequences from strains isolated in Blida province, Algeria. JNBGP 2020: Journees Nationales virtuelles de bioinformatique: Genomique et proteomique - USDB, October 09-10, 2020 ⁷ 2019: Soumeya KHERIS, Mokhtar BENREGUIEG and Abdelkrim RACHEDI* Bacterial Antibiotic Resistance Investigation Database - BARID. International Bioinformatics Day, JIBioinfo2019, 05 Nov. 2019 ^2.1 2019: Abdellahi Ould Ahmed Salem & Abdelkrim Rachedi^*Structural Targets Annotation Database - STAD & PR-Proteins selected targets, The International Conference on Biotechnology and Cancer, December 07-08, 2019 - Oran, Algeria.->Find in Conference Book ^2.2 2015: Abdelkrim Rachedi. STAD the Structural Targets Annotation Database, Proceedings of the 08th International Biocuration Conference, From Big Data to Big Discovery, April 23-26,2015 - Beijing, China. ^2.3 2013: Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings of the 11th International Conference on Biology and Synchrotron Radiation, 8 - 11 September 2013, Humburg, Germany. (A conference Report has been published in the Journal Synchrotron Radiation, Volume 21, Part 1, Pages 280-282 January 2014 ->Find in Journal Synchrotron Radiation) ^2.4 2011: Abdelkrim Rachedi. Annotation of structural targets in South Africa; the STAD database, 2nd ISCB Africa ASBCB Conference on Bioinformatics, March 9-11, 2011 - CapeTown, South Africa. ^2.5 2009: Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings for the Second Southern African Bioinformatics Workshop, 11th - 12th, Johannesburg, October 2009 - Johannesburg, South Africa. ^2.6 2006: Albeck S, ..,Rachedi A. .., Henrick K. "SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallogr D Biol Crystallogr. 2006 ->Find in PubMed ³ 2013: Abdelkrim Rachedi, Khuphukile Madida. NALD: Nucleic Acids and Ligands Database, Modeling Approaches and Algorithms for Advanced Computer Applications (Springer) 2013, 488: 329-336 ->Find in SpringerLink ^4.1 2018: A. Rachedi, A. Mohammedi and A. Boukhalfa, A Mohammedi A Phytoecological Database for Annotating Flora in Region of Maamora - Saida, Algeria. Proceedings: International Seminar On Medicinal Plants (SIPM . 2018), page 23., 2018 ^4.2 2014: A Boukhalfa, A Mohammedi and A Rachedi. An online Phytoecological Database and Exploration System for Flora in the region of Maamora, Saida, La Dynamique et la Valorisation des Ecocystemes Arides et Semi-arides dans un evironnement Changeant (DVEEC), Proceedings, page 59., 2014 ⁵ 2013: Abdelkrim Rachedi. Vers une Base-de-donnees et System d'Exploitation en ligne de la Flore en Algerie (http://www.bioinformaticstools.org/fina). La Journee Scientifique Sur l'Eau et l'Environnement, 30 Juin 2013, Universite Dr. Tahar Moulay,Saida, Algerie. ⁶ 2000: Abdelkrim Rachedi, Michael Rebhan and Hong Xue. GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12. ->Find in PubMed
Contact: Dr. Abdelkrim Rachedi at rachedi@bioinformaticstools.org - © 2011-2021

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