BIT: BioInformatics Tools أنظمة خادمة وأدوات في المعلوماتية الحيوية

Bioinformatics and Structural Biology - Tools & Services
		Relevant Publications & Communications: Dates: 2020 - 2019 - 2018 - 2017 - 2015 - 2014 - 2013 - 2012 - 2011 - 2009 - 2006 - 2005 - 2004 - 2003 - 2000 - 1999 - 1998 - 1997 See also: 2020 - Abdelkrim Rachedi Mutations in the SARS-CoV-2 complete genome sequences from strains isolated in Blida province, Algeria. JNBGP 2020: Journees Nationales virtuelles de bioinformatique: Genomique et proteomique - USDB, October 09-10, 2020 The contribution included the Viruses data Integration Database 2019 - Abdellahi Ould Ahmed Salem & Abdelkrim Rachedi^* Structural Targets Annotation Database - STAD & PR-Proteins selected targets. The International Conference on Biotechnology and Cancer, December 07-08, 2019 2019 - Soumeya KHERIS, Mokhtar BENREGUIEG and Abdelkrim RACHEDI* Bacterial Antibiotic Resistance Investigation Database - BARID. International Bioinformatics Day, JIBioinfo2019, 05 Nov. 2019 2018 - Abdellahi Ould Ahmed Salem, Mira Raimes, Aicha Bessaih, Mohamed Brahimi, Mohamed Amine Deghem, Mehdi Zein and Abdelkrim Rachedi* Structural & Functional Motifs in Metabolic Enzymes . A new set of Functional Motifs. 2^eme Colloques International, Biosciences 2108 "Genie Enzymatique et Production de Metabolites", 28-29 October2018, Oran, Algeria -> See: - Abstract -> - Conference Book: \|.1.\| or \|.2.\| 2018 - A. Rachedi, A. Mohammedi and A. Boukhalfa A Phytoecological Database for Annotating Flora in Region of Maamora - Saida, Algeria. Proceedings: International Seminar On Medicinal Plants (SIPM . January 2018), page 23., 2018, Al-Oued, Algeria ->See: Abstract 2017 - SALEM Abdellahi, RACHEDI Abdelkrim* Structural/Functional Motifs in the Enzymes of the Krebs Cycle, 1ER SEMINAIRE DE BIOINFORMATIQUE, April 04-06, 2017, Blida, Algeria. ->Explore: Citric Acid Cycle Binding Structural & Functional Motifs 2015 - Abdelkrim Rachedi. STAD the Structural Targets Annotation Database, Proceedings of the 08th International Biocuration Conference, From Big Data to Big Discovery April 23-26, 2015, Beijing, China. ->Find in Biocuration 2015 book 2014 - A Boukhalfa, A Mohammedi and A Rachedi An online Phytoecological Database and Exploration System for Flora in the region of Maamora, Saida., La Dynamique et la Valorisation des Ecocystemes Arides et Semi-arides dans un evironnement Changeant (DVEEC), Proceedings, page 59., 2014 2013 - Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings of the 11th International Conference on Biology and Synchrotron Radiation, 8 - 11 September 2013, Humburg, Germany. ( A conference Report has been published in the Journal Synchrotron Radiation, Volume 21, Part 1, Pages 280-282 January 2014, ->Find in Journal Synchrotron Radiation) 2013 - Abdelkrim Rachedi, Khuphukile Madida. NALD: Nucleic Acids and Ligands Database, Modeling Approaches and Algorithms for Advanced Computer Applications (Springer) 2013, 488: 329-336 ->Find in SpringerLink 2013 - Abdelkrim Rachedi. Vers une Base-de-donnees et System d'Exploitation en ligne de la Flore en Algerie (http://www.bioinformaticstools.org/fina). La Journee Scientifique Sur l'Eau et l'Environnement, 30 Juin 2013, Universite Dr. Tahar Moulay,Saida, Algerie. 2012 - Abdelkrim Rachedi and Wits University (Johannesburg) SYSTEMS AND METHODS FOR USE IN MOLECULAR DRUG DESIGN, Patent publication (WO2012/12043), 13 Sept. 2012. ->Find in WIPO 2012 - Abdelkrim Rachedi Bioinformatics in Diseases (like cancer, HIV, Malaria ... etc). International Seminar ' Cancer, Cellular Stress and Bioactive Substances' CSCSB, 23-24 September 2012 - Jijel, Algeria 2011 - Abdelkrim Rachedi, Khuphukile Madida. NALD: Nucleic Acids and Ligands Database; Ligand Binding Motifs, Binding Classes & Disease Links, 2nd ISCB Africa ASBCB Conference on Bioinformatics, March 9-11, 2011 - CapeTown, South Africa. 2011 - Abdelkrim Rachedi. Annotation of structural targets in SouthAfrica; the STAD database, 2nd ISCB Africa ASBCB Conference on Bioinformatics, March 9-11, 2011 - CapeTown, South Africa. 2009 - Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings for the Second Southern African Bioinformatics Workshop, 11th - 12th, Johannesburg, October 2009 - Johannesburg, South Africa. 2006 - Albeck S, .., Rachedi A et.al. SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallogr D Biol Crystallogr. 2006 Oct. ->Find in PubMed 2005 - (in relation to the SSFS system ) Golovin A., Dimitropoulos D., Oldfield T., Rachedi A. and Henrick (2005) MSDsite: A Database Search and Retrieval System for the Analysis and Viewing of Bound Ligands and Active Sites. PROTEINS: Structure, Function, and Bioinformatics 58(1): 190-9. ->Find in PubMed 2004 - A. Golovin, .., A. Rachedi et. al. E-MSD: an integrated data resource for bioinformatics, Nucleic Acids Research, 32 (Database issue), D211-D216, 2004. 2003 - Boutselakis, .., Rachedi, A. et. al. E-MSD: The European Bioinformatics Institute Macromolecular Structure Database. Nucleic Acids Research, 31, 458-462, 2003. 2000 - Abdelkrim Rachedi, Michael Rebhan and Hong Xue. GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12. ->Find in PubMed GABAagent and 3D-GDD databases have been featured under the NetWatch category (GABAing) in Science 287:5455 on February 11, 2000. See PDF: GABAing See also: news0527.pdf: HKUST Univ. press release about the GABAagent system. 1999 - Abdelkrim Rachedi, Michael Rebhan and Hong Xue. Internet-based Integrated Retrieval Information System for GABA receptors. Society for Neuroscience Abstracts. Vol.25, Part 2, page 1809, Oct. 1999 - Miami Beach, Florida, United States. 1999 - Khoo ASB, Balraj P, Rachedi A, Chin CN, Volpi L. A novel complex mutation of the OTC (Ornithine Transcarbamylase) Gene in a Malaysian Pedigree. Human Mutation. 1999 Nov; 14(5): 448. 1998 - Khoo ASB, Balraj P, Rachedi A, Volpi L., Chin CN. Clinical Correlation of a Novel Mutant Ornithine Transcarbamylase (OTCase) Homology Model. In Proceedings of the 10th National Biotechnology Seminar: Biotechnology towards the next millenium, pages 26-27. SIRIM Berhad, Malaysia, 27 & 28 October 1998. See link to the Proceedings: https://library.mosti.gov.my/cgi-bin/koha/opac-MARCdetail.pl?biblionumber=19413 See also: Clinical Correlation of a Novel Mutant Ornithine Transcarbamylase (OTCase) Homology Model 1998 - Khoo ASB, Balraj P, Rachedi A, Volpi L., Tan SK, Lim PKC, Chin CN. Molecular Genetic Investigations of a family with multiple early neonatal deaths. In Abstracts of the First Scientific Seminar of the National Institutes of Health, Ministry of Health, Malaysia: Research in the New Millenium, Page 45. Kuala Lumpur, Malaysia, 30-31 October 1998. 1997 - A. Rachedi, C.E. Sansom, C.R. Groom, J. Thillet, R. Griffin & A.J. Geddes. The Structure of Mouse Dihydrofolate Reductase in Ternary Complex with NADPH and the Lipophilic Antifolate, Methylbenzoprim. In Proceedings of the 9th National Biotechnology Seminar: Positioning National R & D in Biotechnology for Global Competitiveness, pages 96-102. Penang, Malaysia, 23-26 November 1997. See link to the Proceedings: https://library.mosti.gov.my/cgi-bin/koha/opac-MARCdetail.pl?biblionumber=19469 Dates: 2020 - 2019 - 2018 - 2017 - 2015 - 2014 - 2013 - 2012 - 2011 - 2009 - 2006 - 2005 - 2004 - 2003 - 2000 - 1999 - 1998 - 1997 Timeline ... April 2017: CACFMS Structural/Functional Motifs In The Enzymes Of The Krebs Cycle, by the SBB group at UTM Univ., Saida, Algeria. More... September 2015: CUPID A new online under-developement system comes as a result of international collaboration project with Dept. of Cell and Molecular Biology, Uppsala University,Uppsala,Sweden. More... November 2014: FIMA A new online Phytoecological Database & Exploration System for Flora in the region of Maamora, Saida, created by the SBB group at UTM Univ., Saida, Algeria. More... September 2014: STAD updates; 2 new Targets by the SBB group at UTM Univ., Saida, Algeria. More... January 2014: DIRC a newly created bioinformatics service tool for creating database systems providing integrated data for a set of biology-related keywords. More... December 2013: STAD updates; 9 new 3D structures by UCT Univ., South Africa and 3 updated targets by UAE Univ., Morocco. More... November 2013: Neuro. updates; a new card module (5^th), News card (RSS feed), has been added to the Neuro system”. More... September 2013: STAD updates; new structural targets More... August 2013: Neuro. system now provides a 4^th card of search results called Videos card”. More... August 2013: STAD updates; 4 new 3D structures of the Amidase enzyme by the Strcutural Biology Group, UCT Univ., Capetown, South Africa. More... June 2013: Neuro. system now provides 3 cards of search results. These include “Integrated Data”, “Disease” and “Sites & Images” cards. More... May 2013: NALD Database & Methods published in Springer. More... April 2013: "Neuro." updates; a new bioinformatics resource More... February 2013: STAD updates; new structural targets More... September 2012: Patent publication (WO2012/12043) "SYSTEMS AND METHODS FOR USE IN MOLECULAR DRUG DESIGN" More... February 2011: STAD the first and only African contributor to the PSI TargetTrack More... Bioinformatics news ... Research Fellow (AI & Structur... Reply to: Revisiting the use o... Cortical structural changes of... The Mla system of diderm Firmi... The social and structural arch... PepCNN deep learning tool for ... New Molecular Glue Degraders T... Oxford's Deane named EPSRC exe... Complete chloroplast genomes o... All-rounder among receptors in... Clinical, genetic and structur... Comparative genomics and prote... A sequence-based evolutionary ... Multi-domain and complex prote... A stronger core for better pla... Enhancing alphafold-multimer-b... Unlocking the challenges of fi... Comprehensive analysis of the ... University of Oxford's Profess... KromaTiD and SeQure Dx enter p... Key Genes for Pyroptosis-induc... ACE2-independent SARS-CoV-2 vi... Insight into the on/off switch... Synthesis, molecular docking, ... Genomic characterization of SA... NOT-AR-23-022: Request for Inf... Confident Metabolite Identific... UoH extracts pest-curbing plan... Analysis of glycosylation char... How Enterprises Optimize Engin... Illuminating protein space wit... Ongoing shuffling of protein f... The genomics and evolution of ... Uncoupled evolution of the Pol... Human microbiota dysbiosis aft... Identifying and profiling stru... Joe Greener appointed Group Le... Bioinformatics and COVID-19 th... The Limits of AlphaFold: High ... Genome mining reveals novel bi... Impact of N221S missense mutat... Design and evaluation of tadpo... The past, current, and future ... Cheminformatics Master's Certi... 'A Pandora's box': map of prot... WPI-led Team Uncovers New Deta... AI and Deep Learning Applicati... Biochemistry, Quantitative Bio... Computational Biology and Biom... Lociq provides a loci-seeking ... RBIF 101 \| Course Descriptions... Super-pangenome analyses highl... AlphaCutter: Efficient removal... Domain-PFP allows protein func... Foldseek gives AlphaFold prote... Structural and functional anal... Simple test could help predict... Systematic identification of c... Protein structural alignment u... Turning high-throughput struct... Soft-landing methods aim to si... Structural basis for the bindi... Bioinformatics of cyanophycin ... Molecular basis for Nse5-6 med... Evolutionary origin of genomic... Structural basis for receptor ... Identification and validation ... Core Facilities Open House Tou... Bio-Inspired Molecules Promote... New study uncovers effects of ... High-throughput cryo-ET struct... A draft human pangenome refere... Structural basis of NINJ1-medi... Journey to the Jude: Besian Se... Antcin-B, a phytosterol-like c... Telomere-to-telomere assemblie... Tracing the birth of structura... Pangenomic analysis identifies... Structural mobility tunes sign... PacBio Bioinformatics Focusing... Ultrafast structural changes d... Spatially resolved protein map... Double Dare: Exscientia Expand... Structural basis for bacterial... For chemists, the AI revolutio... Databricks' CTO Dael Williamso... A computationally designed ant... Ben Ma - University of Nevada,... Structural and functional insi... Microbiology < Biological & Bi... Structure-informed microbial p... Bipartite genome and structura... A structural biology community... Structural analysis and archit... Structural insights into the b... Computational Biology Seminar ... Repetitive DNA sequence detect... Enhanced antibody-antigen stru... Program of Study < Biological ... AiKPro: deep learning model fo... National & International Conferences.. International conferences: Bioinformatics conferences Biotechnology conferences Biology conferences ConferenceAlerts: All fields conferences ScienceDz: All fields conferences National conferences: ConferenceAlerts: Algeria conferences ... 1 ConferenceAlerts: Algeria conferences ... 2 ScienceDz: Algeria conferences IEEE: Algeria conferences BIT's other services
	BIT on Facebook Tags: Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top Go Top رغم الإنخفاض النسبي لأعداد الإصابة، لا يزال فيروس الإيبولا والمرض المرافق له يشكل خطرا على الصحة في إفريقيا والعلم أجمع... Posted by BioinformaticsTools on Wednesday, 10 June 2015 Go Top "فيما" أو FIMA هي قاعدة بيانات جديدة بقسم البيولوجيا، جامعة سعيدة، تشمل الغطاء النباتي البيئي Phytoecological وهي كذلك ن... Posted by BioinformaticsTools on Sunday, 29 March 2015 Go Top A new Phytoecological Database and Exploration system for “ Flora “ in the region of Maamora, Saida, Algeria. It is... Posted by BioinformaticsTools on Sunday, 29 March 2015 Go Top Student & Collaborative Research Projects .. Student and Collaborative Research Projects in Bioinformatics & Structural Biology Ongoing Research Projects IPPI: Interchain Protein-Protein Interactions Neuro: Integrating data on the Nervous System PSAcan: Prostate Cancer and PSA in Saida, Algeria Educational Services Education made easy for both lecturers and students. Masters Teaching Material at Saida University, 2019-2020 Masters Teaching Material at Saida University, 2018-2019 (content restricted) Masters Teaching Material at Saida University, 2017-2018 (content restricted) Masters Teaching Material at Saida University, 2016-2017 (content restricted) Masters Teaching Material at Saida University, 2015-2016 (content restricted) Masters Teaching Material at Saida University, 2014-2015 (content restricted) Masters Teaching Material at Saida University, 2013-2014 (content restricted) Undergraduate Teaching Material at Saida University, 2011/12-2012/13 Structural Bioinformatics course for Tlemcen Summer University, 9-15 July 2011 (content restricted) Upload Teaching Material, 2014-2015 (for lecturers only) Educational Online Tools & Downloads Educational online and PC standalone tools. Visual Biochemistry Download Teaching Software (windows versions)
Tools, Databases & Services COVID-19 & Viruses Data Integration SARS-CoV-2 Variants, Genomes & Mutations Explorer Viruses Integration Database (Incl. SARS-CoV-2) Vr-β ^{[6], [8]} Bioinformatics Mobile Apps. FIMA Android vr 1.0 ^{[4.1], [4.2]} GABAagent Android vr 1.0 ^[6] Microbial Bioinformatics Research & Services BARID: Bacterial Antibiotic Resistance Investigation Database ^[7] Structural Bioinformatics Research & Services SSFS: Sequence, Structure and Function Server ^[1] STAD: Structural Targets Annotation Database ^{[2.1], [2.2], [2.3], [2.4], [2.5], [2.6]} - See also: NALD: Nucleic Acids and Ligands Database ^[3] Flora Annotation FIMA: Flora in Maamora, Saida, Algeria ^{[4.1], [4.2]} FINA: Flora in Algeria, Database ^[5] Data Intergation tools and databases DIRC: A system for creating data integrated databases and search tools for biology-related topics CUPID:Chaperone/Usher Pathway Identification Database GABAagent: A system for integrating data on GABA receptors ^[6] EblRsr: A resource system for integrating data on the Ebola Virus Disease and related topics. Genomics N2PR: Nucleic Acid Codes Translation to Proteins and Reverse
References ¹ 2005: Golovin A., Dimitropoulos D., Oldfield T., Rachedi A. and Henrick "MSDsite: A Database Search and Retrieval System for the Analysis and Viewing of Bound Ligands and Active Sites. PROTEINS: Structure, Function, and Bioinformatics 58(1): 190-9 2005" << Find in PubMed ⁸2020: Abdelkrim Rachedi Mutations in the SARS-CoV-2 complete genome sequences from strains isolated in Blida province, Algeria. JNBGP 2020: Journees Nationales virtuelles de bioinformatique: Genomique et proteomique - USDB, October 09-10, 2020 ⁷ 2019: Soumeya KHERIS, Mokhtar BENREGUIEG and Abdelkrim RACHEDI* Bacterial Antibiotic Resistance Investigation Database - BARID. International Bioinformatics Day, JIBioinfo2019, 05 Nov. 2019 ^2.1 2019: Abdellahi Ould Ahmed Salem & Abdelkrim Rachedi^*Structural Targets Annotation Database - STAD & PR-Proteins selected targets, The International Conference on Biotechnology and Cancer, December 07-08, 2019 - Oran, Algeria.->Find in Conference Book ^2.2 2015: Abdelkrim Rachedi. STAD the Structural Targets Annotation Database, Proceedings of the 08th International Biocuration Conference, From Big Data to Big Discovery, April 23-26,2015 - Beijing, China. ^2.3 2013: Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings of the 11th International Conference on Biology and Synchrotron Radiation, 8 - 11 September 2013, Humburg, Germany. (A conference Report has been published in the Journal Synchrotron Radiation, Volume 21, Part 1, Pages 280-282 January 2014 ->Find in Journal Synchrotron Radiation) ^2.4 2011: Abdelkrim Rachedi. Annotation of structural targets in South Africa; the STAD database, 2nd ISCB Africa ASBCB Conference on Bioinformatics, March 9-11, 2011 - CapeTown, South Africa. ^2.5 2009: Abdelkrim Rachedi. STAD: Structural Targets Annotation Database, Proceedings for the Second Southern African Bioinformatics Workshop, 11th - 12th, Johannesburg, October 2009 - Johannesburg, South Africa. ^2.6 2006: Albeck S, ..,Rachedi A. .., Henrick K. "SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallogr D Biol Crystallogr. 2006 ->Find in PubMed ³ 2013: Abdelkrim Rachedi, Khuphukile Madida. NALD: Nucleic Acids and Ligands Database, Modeling Approaches and Algorithms for Advanced Computer Applications (Springer) 2013, 488: 329-336 ->Find in SpringerLink ^4.1 2018: A. Rachedi, A. Mohammedi and A. Boukhalfa, A Mohammedi A Phytoecological Database for Annotating Flora in Region of Maamora - Saida, Algeria. Proceedings: International Seminar On Medicinal Plants (SIPM . 2018), page 23., 2018 ^4.2 2014: A Boukhalfa, A Mohammedi and A Rachedi. An online Phytoecological Database and Exploration System for Flora in the region of Maamora, Saida, La Dynamique et la Valorisation des Ecocystemes Arides et Semi-arides dans un evironnement Changeant (DVEEC), Proceedings, page 59., 2014 ⁵ 2013: Abdelkrim Rachedi. Vers une Base-de-donnees et System d'Exploitation en ligne de la Flore en Algerie (http://www.bioinformaticstools.org/fina). La Journee Scientifique Sur l'Eau et l'Environnement, 30 Juin 2013, Universite Dr. Tahar Moulay,Saida, Algerie. ⁶ 2000: Abdelkrim Rachedi, Michael Rebhan and Hong Xue. GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12. ->Find in PubMed
Contact: Dr. Abdelkrim Rachedi at rachedi@bioinformaticstools.org - © 2011-2021

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