BRAID
Data Integration Module
In PubMed:      " Chloramphenicol "
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Title:
The bacterial toxin RelE displays codon-specific cleavage of mRNAs in the ribosomal A site.
Journal:
Cell. 2003 Jan;112(1):131-40
Authors:
Pedersen K, Zavialov AV, Pavlov MY, Elf J, Gerdes K, Ehrenberg M.
Abstract:
The Escherichia coli relBE operon encodes a toxin-antitoxin pair, RelE-RelB. RelB can reverse inhibition of protein synthesis by RelE in vivo. We have found that although RelE does not degrade free RNA, it cleaves mRNA in the ribosomal A site with high codon specificity. Among stop codons UAG is cleaved with fast, UAA intermediate and UGA slow rate, while UCG and CAG are cleaved most rapidly among sense codons. We suggest that inhibition of protein synthesis by RelE is reversed with the help of tmRNA, and that RelE plays a regulatory role in bacteria during adaptation to poor growth conditions.
See full PubMed entry: http://www.ncbi.nlm.nih.gov/pubmed/12526800
BRAID Data Integration Module is based on an improved version of the algorithm reported in the following reference.
Primary citation: Abdelkrim Rachedi et al., GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12.