BRAID
Data Integration Module
In PubMed:      " Chloramphenicol "
                                        Results:
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Title:
Topology analysis of the SecY protein, an integral membrane protein involved in protein export in Escherichia coli.
Journal:
The EMBO journal. 1987 Nov;6(11):3465-70
Authors:
Akiyama Y, Ito K.
Abstract:
The secY (prlA) gene product is an essential component of the Escherichia coli cytoplasmic membrane, and its function is required for the translocation of exocytoplasmic proteins across the membrane. We have analyzed the orientation of the SecY protein in the membrane by examining the hydropathic character of its amino acid sequence, by testing its susceptibility to proteases added to each side of the membrane, and by characterizing SecY-PhoA (alkaline phosphatase) hybrid proteins constructed by TnphoA transpositions. The orientation of the PhoA portion of the hybrid protein with respect to the membrane was inferred from its enzymatic activity as well as sensitivity to external proteases. The results suggest that SecY contains 10 transmembrane segments, five periplasmically exposed parts, and six cytoplasmic regions including the amino- and carboxyterminal regions.
See full PubMed entry: http://www.ncbi.nlm.nih.gov/pubmed/2828030
BRAID Data Integration Module is based on an improved version of the algorithm reported in the following reference.
Primary citation: Abdelkrim Rachedi et al., GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12.