BRAID
Data Integration Module
In PubMed:      " Chloramphenicol "
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Title:
Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors.
Journal:
PLoS biology. 2007 Jan;5(1):e7
Authors:
Sennhauser G, Amstutz P, Briand C, Storchenegger O, Grütter MG.
Abstract:
The multidrug exporter AcrB is the inner membrane component of the AcrAB-TolC drug efflux system in Escherichia coli and is responsible for the resistance of this organism to a wide range of drugs. Here we describe the crystal structure of the trimeric AcrB in complex with a designed ankyrin-repeat protein (DARPin) inhibitor at 2.5-A resolution. The three subunits of AcrB are locked in different conformations revealing distinct channels in each subunit. There seems to be remote conformational coupling between the channel access, exit, and the putative proton-translocation site, explaining how the proton motive force is used for drug export. Thus our structure suggests a transport pathway not through the central pore but through the identified channels in the individual subunits, which greatly advances our understanding of the multidrug export mechanism.
See full PubMed entry: http://www.ncbi.nlm.nih.gov/pubmed/17194213
BRAID Data Integration Module is based on an improved version of the algorithm reported in the following reference.
Primary citation: Abdelkrim Rachedi et al., GABAagent: a system for integrating data on GABA receptors. Bioinformatics. 2000 Apr;16(4):301-12.