Finding GlcSFMs for Glucides in the PDB entry '1NIV' ... |
PDB Entry | Title | Determination Method | Resolution | R-Factor |
1NIV | MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM SNOWDROP (GALANTHUS NIVALIS) BULBS IN COMPLEX WITH MANNOSE | X-RAY | 3.00 | 0.223
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| 1NIV has 5 GlcSFMs: |
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| Motif No. / Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLLS
> Sequence: QDNVY
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MDM /(110) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 89 | GLN | CD | O3' | A | 110 | 3.39 | van der Waals | A | No SSE | 89 | GLN | OE1 | C2' | A | 110 | 3.95 | van der Waals | A | No SSE | 89 | GLN | OE1 | C3' | A | 110 | 3.82 | van der Waals | A | No SSE | 89 | GLN | OE1 | O2' | A | 110 | 3.18 | H.Bond | A | No SSE | 89 | GLN | OE1 | O3' | A | 110 | 2.8 | H.Bond | A | No SSE | 89 | GLN | NE2 | O3' | A | 110 | 3.21 | H.Bond | A | No SSE | 91 | ASP | CG | O2' | A | 110 | 3.69 | van der Waals | A | No SSE | 91 | ASP | OD1 | O2' | A | 110 | 3.79 | H.Bond | A | No SSE | 91 | ASP | OD2 | C2' | A | 110 | 3.64 | van der Waals | A | No SSE | 91 | ASP | OD2 | O2' | A | 110 | 2.85 | H.Bond | A | No SSE | 93 | ASN | CB | O2' | A | 110 | 3.71 | van der Waals | A | No SSE | 93 | ASN | CG | O2' | A | 110 | 3.77 | van der Waals | A | No SSE | 93 | ASN | ND2 | C1' | A | 110 | 3.75 | H.Bond | A | No SSE | 93 | ASN | ND2 | C2' | A | 110 | 3.82 | H.Bond | A | No SSE | 93 | ASN | ND2 | C4' | A | 110 | 3.68 | H.Bond | A | No SSE | 93 | ASN | ND2 | C5' | A | 110 | 3.69 | H.Bond | A | No SSE | 93 | ASN | ND2 | C6' | A | 110 | 3.81 | H.Bond | A | No SSE | 93 | ASN | ND2 | O2' | A | 110 | 2.91 | H.Bond | A | No SSE | 93 | ASN | ND2 | O5' | A | 110 | 3.05 | H.Bond | A | No SSE | 93 | ASN | ND2 | O6' | A | 110 | 3.93 | H.Bond | A | 94-97 S: -1 | 95 | VAL | CG1 | O4' | A | 110 | 3.53 | van der Waals | A | 94-97 S: -1 | 95 | VAL | CG2 | C4' | A | 110 | 3.65 | van der Waals | A | 94-97 S: -1 | 95 | VAL | CG2 | O4' | A | 110 | 3.74 | van der Waals | A | 94-97 S: -1 | 97 | TYR | CZ | O4' | A | 110 | 3.96 | van der Waals | A | 94-97 S: -1 | 97 | TYR | OH | O3' | A | 110 | 3.11 | H.Bond | A | 94-97 S: -1 | 97 | TYR | OH | O4' | A | 110 | 3.24 | H.Bond | |
| 2 / A |
> Structure: LLLSSL
> Sequence: QDNVYAN
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MDM /(111) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 57 | GLN | CD | C3 | A | 111 | 3.72 | van der Waals | A | No SSE | 57 | GLN | CD | O2' | A | 111 | 3.75 | van der Waals | A | No SSE | 57 | GLN | CD | O3' | A | 111 | 3.63 | van der Waals | A | No SSE | 57 | GLN | OE1 | C1 | A | 111 | 3.93 | van der Waals | A | No SSE | 57 | GLN | OE1 | C2 | A | 111 | 3.45 | van der Waals | A | No SSE | 57 | GLN | OE1 | C3 | A | 111 | 3.32 | van der Waals | A | No SSE | 57 | GLN | OE1 | O3 | A | 111 | 3.76 | H.Bond | A | No SSE | 57 | GLN | OE1 | O3' | A | 111 | 3.18 | H.Bond | A | No SSE | 57 | GLN | NE2 | C3 | A | 111 | 3.92 | H.Bond | A | No SSE | 57 | GLN | NE2 | C2' | A | 111 | 3.72 | H.Bond | A | No SSE | 57 | GLN | NE2 | C3' | A | 111 | 3.92 | H.Bond | A | No SSE | 57 | GLN | NE2 | O2' | A | 111 | 2.63 | H.Bond | A | No SSE | 57 | GLN | NE2 | O3' | A | 111 | 3.28 | H.Bond | A | No SSE | 59 | ASP | CG | O2' | A | 111 | 3.78 | van der Waals | A | No SSE | 59 | ASP | OD1 | O2' | A | 111 | 3.95 | H.Bond | A | No SSE | 59 | ASP | OD2 | C2' | A | 111 | 3.5 | van der Waals | A | No SSE | 59 | ASP | OD2 | O2' | A | 111 | 2.85 | H.Bond | A | No SSE | 61 | ASN | CB | O2' | A | 111 | 3.35 | van der Waals | A | No SSE | 61 | ASN | CG | O2' | A | 111 | 3.57 | van der Waals | A | No SSE | 61 | ASN | ND2 | C1' | A | 111 | 3.54 | H.Bond | A | No SSE | 61 | ASN | ND2 | C2' | A | 111 | 3.81 | H.Bond | A | No SSE | 61 | ASN | ND2 | C4' | A | 111 | 3.99 | H.Bond | A | No SSE | 61 | ASN | ND2 | C5' | A | 111 | 3.64 | H.Bond | A | No SSE | 61 | ASN | ND2 | C6' | A | 111 | 3.64 | H.Bond | A | No SSE | 61 | ASN | ND2 | O2' | A | 111 | 2.91 | H.Bond | A | No SSE | 61 | ASN | ND2 | O5' | A | 111 | 2.79 | H.Bond | A | No SSE | 61 | ASN | ND2 | O6' | A | 111 | 3.68 | H.Bond | A | 62-65 S: -1 | 63 | VAL | CG2 | C6' | A | 111 | 3.95 | van der Waals | A | 62-65 S: -1 | 65 | TYR | CE1 | O4' | A | 111 | 3.63 | van der Waals | A | 62-65 S: -1 | 65 | TYR | CZ | O4' | A | 111 | 3.58 | van der Waals | A | 62-65 S: -1 | 65 | TYR | OH | C1 | A | 111 | 3.73 | van der Waals | A | 62-65 S: -1 | 65 | TYR | OH | C2 | A | 111 | 3.4 | van der Waals | A | 62-65 S: -1 | 65 | TYR | OH | C4' | A | 111 | 3.52 | van der Waals | A | 62-65 S: -1 | 65 | TYR | OH | O3' | A | 111 | 3.3 | H.Bond | A | 62-65 S: -1 | 65 | TYR | OH | O4' | A | 111 | 2.8 | H.Bond | A | 71-74 S: -1 | 74 | ALA | CB | C6' | A | 111 | 3.93 | van der Waals | A | 71-74 S: -1 | 74 | ALA | CB | O6' | A | 111 | 3.77 | van der Waals | A | No SSE | 76 | ASN | OD1 | O6' | A | 111 | 3.72 | H.Bond | |
| 3 / A |
> Structure: LLLS
> Sequence: QDNY
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MDM /(112) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 26 | GLN | CD | O2' | A | 112 | 3.94 | van der Waals | A | No SSE | 26 | GLN | CD | O3' | A | 112 | 3.72 | van der Waals | A | No SSE | 26 | GLN | OE1 | C2 | A | 112 | 3.78 | van der Waals | A | No SSE | 26 | GLN | OE1 | O3' | A | 112 | 3.57 | H.Bond | A | No SSE | 26 | GLN | NE2 | C3 | A | 112 | 3.97 | H.Bond | A | No SSE | 26 | GLN | NE2 | C2' | A | 112 | 3.75 | H.Bond | A | No SSE | 26 | GLN | NE2 | C3' | A | 112 | 3.81 | H.Bond | A | No SSE | 26 | GLN | NE2 | O2' | A | 112 | 2.7 | H.Bond | A | No SSE | 26 | GLN | NE2 | O3' | A | 112 | 3.06 | H.Bond | A | No SSE | 28 | ASP | CG | O2' | A | 112 | 3.57 | van der Waals | A | No SSE | 28 | ASP | OD1 | O2' | A | 112 | 3.64 | H.Bond | A | No SSE | 28 | ASP | OD2 | C2' | A | 112 | 3.29 | van der Waals | A | No SSE | 28 | ASP | OD2 | O2' | A | 112 | 2.74 | H.Bond | A | No SSE | 30 | ASN | CB | O2' | A | 112 | 3.31 | van der Waals | A | No SSE | 30 | ASN | CG | O2' | A | 112 | 3.6 | van der Waals | A | No SSE | 30 | ASN | ND2 | C1' | A | 112 | 3.39 | H.Bond | A | No SSE | 30 | ASN | ND2 | C2' | A | 112 | 3.75 | H.Bond | A | No SSE | 30 | ASN | ND2 | C5' | A | 112 | 3.84 | H.Bond | A | No SSE | 30 | ASN | ND2 | O2' | A | 112 | 2.93 | H.Bond | A | No SSE | 30 | ASN | ND2 | O5' | A | 112 | 2.81 | H.Bond | A | 31-35 S: -1 | 34 | TYR | CE1 | O4' | A | 112 | 3.7 | van der Waals | A | 31-35 S: -1 | 34 | TYR | CZ | O4' | A | 112 | 3.56 | van der Waals | A | 31-35 S: -1 | 34 | TYR | OH | C1 | A | 112 | 3.45 | van der Waals | A | 31-35 S: -1 | 34 | TYR | OH | C2 | A | 112 | 3.84 | van der Waals | A | 31-35 S: -1 | 34 | TYR | OH | C3' | A | 112 | 3.84 | van der Waals | A | 31-35 S: -1 | 34 | TYR | OH | C4' | A | 112 | 3.17 | van der Waals | A | 31-35 S: -1 | 34 | TYR | OH | O3' | A | 112 | 3.28 | H.Bond | A | 31-35 S: -1 | 34 | TYR | OH | O4' | A | 112 | 2.61 | H.Bond | |
| 4 / C |
> Structure: LLLS
> Sequence: QDNVY
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MDM /(110) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 89 | GLN | CD | O3' | C | 110 | 3.4 | van der Waals | C | No SSE | 89 | GLN | OE1 | C2' | C | 110 | 3.97 | van der Waals | C | No SSE | 89 | GLN | OE1 | C3' | C | 110 | 3.83 | van der Waals | C | No SSE | 89 | GLN | OE1 | O2' | C | 110 | 3.2 | H.Bond | C | No SSE | 89 | GLN | OE1 | O3' | C | 110 | 2.8 | H.Bond | C | No SSE | 89 | GLN | NE2 | O3' | C | 110 | 3.24 | H.Bond | C | No SSE | 91 | ASP | CG | O2' | C | 110 | 3.67 | van der Waals | C | No SSE | 91 | ASP | OD1 | O2' | C | 110 | 3.78 | H.Bond | C | No SSE | 91 | ASP | OD2 | C2' | C | 110 | 3.62 | van der Waals | C | No SSE | 91 | ASP | OD2 | O2' | C | 110 | 2.81 | H.Bond | C | No SSE | 93 | ASN | CB | O2' | C | 110 | 3.71 | van der Waals | C | No SSE | 93 | ASN | CG | O2' | C | 110 | 3.76 | van der Waals | C | No SSE | 93 | ASN | ND2 | C1' | C | 110 | 3.77 | H.Bond | C | No SSE | 93 | ASN | ND2 | C2' | C | 110 | 3.82 | H.Bond | C | No SSE | 93 | ASN | ND2 | C4' | C | 110 | 3.7 | H.Bond | C | No SSE | 93 | ASN | ND2 | C5' | C | 110 | 3.71 | H.Bond | C | No SSE | 93 | ASN | ND2 | C6' | C | 110 | 3.83 | H.Bond | C | No SSE | 93 | ASN | ND2 | O2' | C | 110 | 2.9 | H.Bond | C | No SSE | 93 | ASN | ND2 | O5' | C | 110 | 3.07 | H.Bond | C | No SSE | 93 | ASN | ND2 | O6' | C | 110 | 3.93 | H.Bond | C | 94-97 S: -1 | 95 | VAL | CG1 | O4' | C | 110 | 3.54 | van der Waals | C | 94-97 S: -1 | 95 | VAL | CG2 | C4' | C | 110 | 3.66 | van der Waals | C | 94-97 S: -1 | 95 | VAL | CG2 | O4' | C | 110 | 3.75 | van der Waals | C | 94-97 S: -1 | 97 | TYR | OH | O3' | C | 110 | 3.16 | H.Bond | C | 94-97 S: -1 | 97 | TYR | OH | O4' | C | 110 | 3.3 | H.Bond | |
| 5 / C |
> Structure: LLLSSL
> Sequence: QDNVYAN
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MDM /(111) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 57 | GLN | CD | O2' | C | 111 | 3.78 | van der Waals | C | No SSE | 57 | GLN | CD | O3' | C | 111 | 3.63 | van der Waals | C | No SSE | 57 | GLN | OE1 | O3' | C | 111 | 3.18 | H.Bond | C | No SSE | 57 | GLN | NE2 | C2' | C | 111 | 3.74 | H.Bond | C | No SSE | 57 | GLN | NE2 | C3' | C | 111 | 3.91 | H.Bond | C | No SSE | 57 | GLN | NE2 | O2' | C | 111 | 2.64 | H.Bond | C | No SSE | 57 | GLN | NE2 | O3' | C | 111 | 3.3 | H.Bond | C | No SSE | 59 | ASP | CG | O2' | C | 111 | 3.73 | van der Waals | C | No SSE | 59 | ASP | OD1 | O2' | C | 111 | 3.93 | H.Bond | C | No SSE | 59 | ASP | OD2 | C2' | C | 111 | 3.48 | van der Waals | C | No SSE | 59 | ASP | OD2 | O2' | C | 111 | 2.76 | H.Bond | C | No SSE | 61 | ASN | CB | O2' | C | 111 | 3.34 | van der Waals | C | No SSE | 61 | ASN | CG | O2' | C | 111 | 3.58 | van der Waals | C | No SSE | 61 | ASN | ND2 | C1' | C | 111 | 3.55 | H.Bond | C | No SSE | 61 | ASN | ND2 | C2' | C | 111 | 3.81 | H.Bond | C | No SSE | 61 | ASN | ND2 | C5' | C | 111 | 3.65 | H.Bond | C | No SSE | 61 | ASN | ND2 | C6' | C | 111 | 3.66 | H.Bond | C | No SSE | 61 | ASN | ND2 | O2' | C | 111 | 2.92 | H.Bond | C | No SSE | 61 | ASN | ND2 | O5' | C | 111 | 2.8 | H.Bond | C | No SSE | 61 | ASN | ND2 | O6' | C | 111 | 3.75 | H.Bond | C | 62-65 S: -1 | 63 | VAL | CG2 | C4' | C | 111 | 3.99 | van der Waals | C | 62-65 S: -1 | 63 | VAL | CG2 | C6' | C | 111 | 3.93 | van der Waals | C | 62-65 S: -1 | 65 | TYR | CE1 | O4' | C | 111 | 3.61 | van der Waals | C | 62-65 S: -1 | 65 | TYR | CZ | O4' | C | 111 | 3.56 | van der Waals | C | 62-65 S: -1 | 65 | TYR | OH | C3' | C | 111 | 3.97 | van der Waals | C | 62-65 S: -1 | 65 | TYR | OH | C4' | C | 111 | 3.49 | van der Waals | C | 62-65 S: -1 | 65 | TYR | OH | O3' | C | 111 | 3.27 | H.Bond | C | 62-65 S: -1 | 65 | TYR | OH | O4' | C | 111 | 2.78 | H.Bond | C | 71-74 S: -1 | 74 | ALA | CB | C6' | C | 111 | 3.94 | van der Waals | C | 71-74 S: -1 | 74 | ALA | CB | O6' | C | 111 | 3.78 | van der Waals | C | No SSE | 76 | ASN | OD1 | O6' | C | 111 | 3.73 | H.Bond | |