GlcSFMs: Glucides Binding Structural & Functional Motifs - v. β November 2015.
© University Dr Tahar Moulay, Saida.



Project realized by:Zein Mehdi (in his project of MSc in Biology, 2014-2015)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Glucides Binding Structural & Functional Motifs
- GlcSFMs database-
Find GlcSFMs by Ligands:
BGC   G6P   NAG   2FP   FBP   F6P   MDM   MMA   MAN   LBT   TDG   LAT   R5P   RIP   0MK   GAL   NGA   IUG   ARB   ARA   ALL   AOS   NA1   3BU   A6P   5RP   CAP   RUB   XLS   XYS   XUL   XYL   MBG   PAN   
Find GlcSFMs by PDB entries:
2CDB   1CQ1   1UP6   3ACI   4QFH   4EM5   1BG3   1ZM1   1GPE   9LYZ   3MMT   1ZAI   2QDG   1FDJ   3VKV   3PQD   1HOX   3VPH   1T10   2CXS   4K1Y   1NIV   2EF6   4GX7   4OIZ   1LOG   1KUJ   1QDO   1QDC   2FMD   4GA9   4OJO   4BME   3AP4   1PV7   2NN8   4NO4   4YM3   3VT0   2ZGO   4ADU   1ZHA   1DBP   1DRK   4Q0U   3WW1   4DUX   4Q0P   1OGD   1DRJ   4LO1   4XBQ   4XBN   4I4V   4G9N   3COR   1AFA   3ZGG   3ZGF   1CIW   3TB6   1KOJ   1MMZ   4QDP   1BAP   6ABP   2ARC   3A22   1ABE   4RXT   1RPJ   3M0M   3PH4   4GJJ   2I57   1HKI   3WW4   1HKJ   3FY1   2VVO   3OVQ   3GND   2VVP   1TKU   4P77   1RBL   1RXO   1RCX   2ISS   4M8L   8XIA   3XIS   4XIS   4GNA   1XLM   2XIS   1XIC   1XIG   1XII   5XIA   
Finding GlcSFMs for the glucide 'ARB' ...
Ligand: IDFull NameFormula Chemistry
ARBBETA-L-ARABINOSEC5 H10 O5ARB
There are 7 GlcSFMs:
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
23TB6Structure of the effector-binding domain of arabinose repressor AraR from Bacillus subtilisX-RAY2.210.188
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LHLLHLHLL +6w
  > Sequence: YIFENQRYNDH
ARB
/(400)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LHLLHLHLL +5w
  > Sequence: YIFENQRYNDH
ARB
/(400)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
21MMZCrystal structure of galactose mutarotase from Lactococcus lactis complexed with L-arabinoseX-RAY1.800.172
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLLLSSS +3w
  > Sequence: RHHEDFE
ARB
/(348)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: SLLLSSS +4w
  > Sequence: RHHEDFE
ARB
/(348)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
14QDPJoint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with twoX-RAY2.000.231
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HSSLSLLLLHSL
  > Sequence: WHTFVWEKNEHDD
ARB
/(403)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
11BAPA PRO TO GLY MUTATION IN THE HINGE OF THE ARABINOSE-BINDING PROTEIN ENHANCES BINDING AND ALTERS SPECX-RAY1.750.201
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLHSSLHSLS +3w
  > Sequence: KEWFCDDRMNN
ARB
/(308)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
16ABPSUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES OF AN ARABINOSE-BINDING PROTEIN MUTANT (MET108LEU) WHICH X-RAY1.670.160
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLHSLHSLS +2w
  > Sequence: KEWFDDRMNN
ARB
/(308)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]