There are 10 GlcSFMs: |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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6 | 4I4V | BEL beta-trefoil complex with N-acetylgalactosamine | X-RAY | 1.50 | 0.188
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SLSH
+3w
> Sequence: YRFYDQ
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NGA /(201) |
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> Graphics rep1:
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> Graphics rep2:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 116-120 S: -1 | 119 | TYR | CB | O6 | A | 201 | 3.64 | van der Waals | A | 116-120 S: -1 | 119 | TYR | CG | C6 | A | 201 | 3.79 | van der Waals | A | 116-120 S: -1 | 119 | TYR | CG | O6 | A | 201 | 3.96 | van der Waals | A | 116-120 S: -1 | 119 | TYR | CD1 | C6 | A | 201 | 3.84 | van der Waals | A | No SSE | 121 | ARG | CD | O4 | A | 201 | 3.42 | van der Waals | A | No SSE | 121 | ARG | CZ | O4 | A | 201 | 3.96 | van der Waals | A | No SSE | 121 | ARG | NH2 | C1 | A | 201 | 3.84 | H.Bond | A | No SSE | 121 | ARG | NH2 | C2 | A | 201 | 3.78 | H.Bond | A | No SSE | 121 | ARG | NH2 | C4 | A | 201 | 3.92 | H.Bond | A | No SSE | 121 | ARG | NH2 | C5 | A | 201 | 3.88 | H.Bond | A | No SSE | 121 | ARG | NH2 | C6 | A | 201 | 3.92 | H.Bond | A | No SSE | 121 | ARG | NH2 | O1 | A | 201 | 3.85 | H.Bond | A | No SSE | 121 | ARG | NH2 | O4 | A | 201 | 2.97 | H.Bond | A | No SSE | 121 | ARG | NH2 | O5 | A | 201 | 3.2 | H.Bond | A | 128-131 S: -1 | 131 | PHE | CG | C6 | A | 201 | 3.72 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CD1 | C6 | A | 201 | 3.99 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CD1 | O5 | A | 201 | 3.73 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CD2 | C6 | A | 201 | 3.85 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CD2 | O6 | A | 201 | 3.89 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CE1 | C1 | A | 201 | 3.88 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CE1 | O1 | A | 201 | 3.99 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CE1 | O5 | A | 201 | 3.58 | van der Waals | A | 128-131 S: -1 | 131 | PHE | CZ | O5 | A | 201 | 3.99 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CG | C3 | A | 201 | 3.98 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CG | C4 | A | 201 | 3.82 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CD1 | C3 | A | 201 | 3.94 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CD1 | O3 | A | 201 | 3.96 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CD2 | C3 | A | 201 | 3.98 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CD2 | C4 | A | 201 | 3.8 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CD2 | C5 | A | 201 | 3.74 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CE1 | C3 | A | 201 | 3.94 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CE2 | C3 | A | 201 | 3.98 | van der Waals | A | 136-139 H: 5 | 136 | TYR | CZ | C3 | A | 201 | 3.95 | van der Waals | A | 136-139 H: 5 | 138 | ASP | CG | C4 | A | 201 | 3.92 | van der Waals | A | 136-139 H: 5 | 138 | ASP | CG | O4 | A | 201 | 3.46 | van der Waals | A | 136-139 H: 5 | 138 | ASP | CG | O6 | A | 201 | 3.69 | van der Waals | A | 136-139 H: 5 | 138 | ASP | OD1 | C4 | A | 201 | 3.28 | van der Waals | A | 136-139 H: 5 | 138 | ASP | OD1 | O4 | A | 201 | 2.52 | H.Bond | A | 136-139 H: 5 | 138 | ASP | OD1 | O6 | A | 201 | 3.94 | H.Bond | A | 136-139 H: 5 | 138 | ASP | OD2 | C4 | A | 201 | 3.74 | van der Waals | A | 136-139 H: 5 | 138 | ASP | OD2 | C6 | A | 201 | 3.61 | van der Waals | A | 136-139 H: 5 | 138 | ASP | OD2 | O4 | A | 201 | 3.65 | H.Bond | A | 136-139 H: 5 | 138 | ASP | OD2 | O6 | A | 201 | 2.7 | H.Bond | A | 136-139 H: 5 | 139 | GLN | CG | O6 | A | 201 | 3.23 | van der Waals | A | 136-139 H: 5 | 139 | GLN | CD | O6 | A | 201 | 3.48 | van der Waals | A | 136-139 H: 5 | 139 | GLN | NE2 | C6 | A | 201 | 3.88 | H.Bond | A | 136-139 H: 5 | 139 | GLN | NE2 | O6 | A | 201 | 2.78 | H.Bond | A | Water | 354 | HOH | O | C1 | A | 201 | 3.68 | van der Waals | A | Water | 354 | HOH | O | C6 | A | 201 | 3.89 | van der Waals | A | Water | 354 | HOH | O | O1 | A | 201 | 3.18 | H.Bond | A | Water | 354 | HOH | O | O5 | A | 201 | 2.9 | H.Bond | A | Water | 366 | HOH | O | C3 | A | 201 | 3.93 | van der Waals | A | Water | 366 | HOH | O | O3 | A | 201 | 2.87 | H.Bond | A | Water | 366 | HOH | O | O4 | A | 201 | 3.67 | H.Bond | A | Water | 436 | HOH | O | C2 | A | 201 | 3.93 | van der Waals | A | Water | 436 | HOH | O | C7 | A | 201 | 3.68 | van der Waals | A | Water | 436 | HOH | O | C8 | A | 201 | 3.37 | van der Waals | A | Water | 436 | HOH | O | N2 | A | 201 | 2.94 | H.Bond | |
| 2 / A |
> Structure: SLSH
+2w
> Sequence: YRYYDQ
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NGA /(202) |
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> Graphics rep1:
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> Graphics rep2:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 23-26 S: 0 | 25 | TYR | CB | C6 | A | 202 | 3.73 | van der Waals | A | 23-26 S: 0 | 25 | TYR | CB | O6 | A | 202 | 3.57 | van der Waals | A | 23-26 S: 0 | 25 | TYR | CG | C6 | A | 202 | 3.56 | van der Waals | A | 23-26 S: 0 | 25 | TYR | CG | O6 | A | 202 | 3.98 | van der Waals | A | 23-26 S: 0 | 25 | TYR | CD2 | C6 | A | 202 | 3.53 | van der Waals | A | No SSE | 27 | ARG | CD | O4 | A | 202 | 3.4 | van der Waals | A | No SSE | 27 | ARG | CZ | O4 | A | 202 | 3.87 | van der Waals | A | No SSE | 27 | ARG | NH2 | C4 | A | 202 | 3.88 | H.Bond | A | No SSE | 27 | ARG | NH2 | O4 | A | 202 | 2.86 | H.Bond | A | No SSE | 27 | ARG | NH2 | O5 | A | 202 | 3.3 | H.Bond | A | 34-37 S: -1 | 37 | TYR | CG | C6 | A | 202 | 3.82 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CD1 | C6 | A | 202 | 3.96 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CD1 | O6 | A | 202 | 3.98 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CD2 | O5 | A | 202 | 3.76 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CE2 | C1 | A | 202 | 3.62 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CE2 | O1 | A | 202 | 3.71 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CE2 | O5 | A | 202 | 3.59 | van der Waals | A | 34-37 S: -1 | 37 | TYR | CZ | C1 | A | 202 | 3.89 | van der Waals | A | 34-37 S: -1 | 37 | TYR | OH | C1 | A | 202 | 3.98 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CB | O6 | A | 202 | 3.54 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CG | C3 | A | 202 | 3.89 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CG | C4 | A | 202 | 3.75 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CD1 | C3 | A | 202 | 3.64 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CD1 | C4 | A | 202 | 3.93 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CD2 | C3 | A | 202 | 3.99 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CD2 | C4 | A | 202 | 3.95 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CD2 | C5 | A | 202 | 3.8 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CE1 | C3 | A | 202 | 3.53 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CE1 | O3 | A | 202 | 3.91 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CE2 | C3 | A | 202 | 3.9 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CZ | C3 | A | 202 | 3.67 | van der Waals | A | 42-45 H: 5 | 42 | TYR | CZ | N2 | A | 202 | 3.64 | H.Bond | A | 42-45 H: 5 | 42 | TYR | OH | C7 | A | 202 | 3.94 | van der Waals | A | 42-45 H: 5 | 42 | TYR | OH | C8 | A | 202 | 3.43 | van der Waals | A | 42-45 H: 5 | 42 | TYR | OH | N2 | A | 202 | 3.44 | H.Bond | A | 42-45 H: 5 | 44 | ASP | CG | C4 | A | 202 | 3.92 | van der Waals | A | 42-45 H: 5 | 44 | ASP | CG | O4 | A | 202 | 3.61 | van der Waals | A | 42-45 H: 5 | 44 | ASP | CG | O6 | A | 202 | 3.58 | van der Waals | A | 42-45 H: 5 | 44 | ASP | OD1 | C4 | A | 202 | 3.79 | van der Waals | A | 42-45 H: 5 | 44 | ASP | OD1 | C6 | A | 202 | 3.44 | van der Waals | A | 42-45 H: 5 | 44 | ASP | OD1 | O4 | A | 202 | 3.86 | H.Bond | A | 42-45 H: 5 | 44 | ASP | OD1 | O6 | A | 202 | 2.59 | H.Bond | A | 42-45 H: 5 | 44 | ASP | OD2 | C4 | A | 202 | 3.27 | van der Waals | A | 42-45 H: 5 | 44 | ASP | OD2 | C6 | A | 202 | 3.91 | van der Waals | A | 42-45 H: 5 | 44 | ASP | OD2 | O4 | A | 202 | 2.62 | H.Bond | A | 42-45 H: 5 | 44 | ASP | OD2 | O6 | A | 202 | 3.83 | H.Bond | A | 42-45 H: 5 | 45 | GLN | CG | O6 | A | 202 | 3.34 | van der Waals | A | 42-45 H: 5 | 45 | GLN | CD | O6 | A | 202 | 3.47 | van der Waals | A | 42-45 H: 5 | 45 | GLN | NE2 | C6 | A | 202 | 3.84 | H.Bond | A | 42-45 H: 5 | 45 | GLN | NE2 | O6 | A | 202 | 2.71 | H.Bond | A | Water | 368 | HOH | O | O4 | A | 202 | 3.96 | H.Bond | A | Water | 418 | HOH | O | C1 | A | 202 | 3.52 | van der Waals | A | Water | 418 | HOH | O | O1 | A | 202 | 3.01 | H.Bond | A | Water | 418 | HOH | O | O5 | A | 202 | 2.87 | H.Bond | |
| 3 / B |
> Structure: SLSH
+6w
> Sequence: YRFYDQ
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NGA /(201) |
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> Graphics rep1:
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> Graphics rep2:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | 116-120 S: -1 | 119 | TYR | CB | C6 | B | 201 | 3.81 | van der Waals | B | 116-120 S: -1 | 119 | TYR | CB | O6 | B | 201 | 3.63 | van der Waals | B | 116-120 S: -1 | 119 | TYR | CG | C6 | B | 201 | 3.6 | van der Waals | B | 116-120 S: -1 | 119 | TYR | CD2 | C6 | B | 201 | 3.7 | van der Waals | B | No SSE | 121 | ARG | CD | O4 | B | 201 | 3.57 | van der Waals | B | No SSE | 121 | ARG | CZ | O4 | B | 201 | 3.96 | van der Waals | B | No SSE | 121 | ARG | NH2 | C1 | B | 201 | 3.62 | H.Bond | B | No SSE | 121 | ARG | NH2 | C2 | B | 201 | 3.76 | H.Bond | B | No SSE | 121 | ARG | NH2 | C4 | B | 201 | 3.8 | H.Bond | B | No SSE | 121 | ARG | NH2 | C5 | B | 201 | 3.71 | H.Bond | B | No SSE | 121 | ARG | NH2 | C6 | B | 201 | 3.89 | H.Bond | B | No SSE | 121 | ARG | NH2 | O1 | B | 201 | 3.6 | H.Bond | B | No SSE | 121 | ARG | NH2 | O4 | B | 201 | 2.91 | H.Bond | B | No SSE | 121 | ARG | NH2 | O5 | B | 201 | 2.94 | H.Bond | B | 128-131 S: -1 | 131 | PHE | CG | C6 | B | 201 | 3.87 | van der Waals | B | 128-131 S: -1 | 131 | PHE | CD1 | O5 | B | 201 | 3.68 | van der Waals | B | 128-131 S: -1 | 131 | PHE | CD2 | C6 | B | 201 | 3.98 | van der Waals | B | 128-131 S: -1 | 131 | PHE | CD2 | O6 | B | 201 | 3.92 | van der Waals | B | 128-131 S: -1 | 131 | PHE | CE1 | C1 | B | 201 | 3.62 | van der Waals | B | 128-131 S: -1 | 131 | PHE | CE1 | O1 | B | 201 | 3.93 | van der Waals | B | 128-131 S: -1 | 131 | PHE | CE1 | O5 | B | 201 | 3.74 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CG | C4 | B | 201 | 3.96 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CD2 | C3 | B | 201 | 3.93 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CD2 | C4 | B | 201 | 3.82 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CD2 | C5 | B | 201 | 3.98 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CE1 | O3 | B | 201 | 3.99 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CE2 | C3 | B | 201 | 3.82 | van der Waals | B | 136-139 H: 5 | 136 | TYR | CZ | C3 | B | 201 | 3.93 | van der Waals | B | 136-139 H: 5 | 138 | ASP | CG | O4 | B | 201 | 3.68 | van der Waals | B | 136-139 H: 5 | 138 | ASP | CG | O6 | B | 201 | 3.55 | van der Waals | B | 136-139 H: 5 | 138 | ASP | OD1 | C4 | B | 201 | 3.95 | van der Waals | B | 136-139 H: 5 | 138 | ASP | OD1 | C6 | B | 201 | 3.48 | van der Waals | B | 136-139 H: 5 | 138 | ASP | OD1 | O4 | B | 201 | 3.96 | H.Bond | B | 136-139 H: 5 | 138 | ASP | OD1 | O6 | B | 201 | 2.61 | H.Bond | B | 136-139 H: 5 | 138 | ASP | OD2 | C4 | B | 201 | 3.35 | van der Waals | B | 136-139 H: 5 | 138 | ASP | OD2 | C6 | B | 201 | 3.82 | van der Waals | B | 136-139 H: 5 | 138 | ASP | OD2 | O4 | B | 201 | 2.65 | H.Bond | B | 136-139 H: 5 | 138 | ASP | OD2 | O6 | B | 201 | 3.73 | H.Bond | B | 136-139 H: 5 | 139 | GLN | CG | O6 | B | 201 | 3.22 | van der Waals | B | 136-139 H: 5 | 139 | GLN | CD | O6 | B | 201 | 3.51 | van der Waals | B | 136-139 H: 5 | 139 | GLN | NE2 | O6 | B | 201 | 2.84 | H.Bond | B | Water | 308 | HOH | O | C1 | B | 201 | 3.5 | van der Waals | B | Water | 308 | HOH | O | C2 | B | 201 | 3.46 | van der Waals | B | Water | 308 | HOH | O | C3 | B | 201 | 3.63 | van der Waals | B | Water | 308 | HOH | O | C7 | B | 201 | 3.76 | van der Waals | B | Water | 308 | HOH | O | C8 | B | 201 | 3.77 | van der Waals | B | Water | 308 | HOH | O | N2 | B | 201 | 2.79 | H.Bond | B | Water | 362 | HOH | O | O3 | B | 201 | 3.13 | H.Bond | B | Water | 362 | HOH | O | O4 | B | 201 | 3.44 | H.Bond | B | Water | 380 | HOH | O | C1 | B | 201 | 3.54 | van der Waals | B | Water | 380 | HOH | O | O1 | B | 201 | 2.66 | H.Bond | B | Water | 382 | HOH | O | C3 | B | 201 | 3.6 | van der Waals | B | Water | 382 | HOH | O | C7 | B | 201 | 3.61 | van der Waals | B | Water | 382 | HOH | O | C8 | B | 201 | 3.88 | van der Waals | B | Water | 382 | HOH | O | N2 | B | 201 | 3.26 | H.Bond | B | Water | 382 | HOH | O | O3 | B | 201 | 2.77 | H.Bond | B | Water | 404 | HOH | O | C2 | B | 201 | 3.85 | van der Waals | B | Water | 404 | HOH | O | C7 | B | 201 | 3.98 | van der Waals | B | Water | 404 | HOH | O | O4 | B | 201 | 3.98 | H.Bond | B | Water | 404 | HOH | O | O7 | B | 201 | 2.99 | H.Bond | B | Water | 430 | HOH | O | C1 | B | 201 | 3.5 | van der Waals | B | Water | 430 | HOH | O | O1 | B | 201 | 2.74 | H.Bond | B | Water | 430 | HOH | O | O5 | B | 201 | 3.06 | H.Bond | |
| 4 / B |
> Structure: SLSH
> Sequence: FRIYDN
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NGA /(202) |
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> Graphics rep1:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | 70-73 S: 0 | 72 | PHE | CB | C6 | B | 202 | 3.89 | van der Waals | B | 70-73 S: 0 | 72 | PHE | CB | O6 | B | 202 | 3.46 | van der Waals | B | 70-73 S: 0 | 72 | PHE | CG | C6 | B | 202 | 3.59 | van der Waals | B | 70-73 S: 0 | 72 | PHE | CG | O6 | B | 202 | 3.74 | van der Waals | B | 70-73 S: 0 | 72 | PHE | CD2 | C6 | B | 202 | 3.41 | van der Waals | B | 70-73 S: 0 | 72 | PHE | CD2 | O6 | B | 202 | 3.74 | van der Waals | B | 70-73 S: 0 | 72 | PHE | CE2 | C6 | B | 202 | 3.93 | van der Waals | B | No SSE | 74 | ARG | CD | O4 | B | 202 | 3.56 | van der Waals | B | No SSE | 74 | ARG | NH1 | C1 | B | 202 | 3.97 | H.Bond | B | No SSE | 74 | ARG | NH1 | C5 | B | 202 | 3.77 | H.Bond | B | No SSE | 74 | ARG | NH1 | C6 | B | 202 | 3.75 | H.Bond | B | No SSE | 74 | ARG | NH1 | O4 | B | 202 | 3.15 | H.Bond | B | No SSE | 74 | ARG | NH1 | O5 | B | 202 | 3.05 | H.Bond | B | 81-84 S: -1 | 84 | ILE | CG2 | O6 | B | 202 | 3.72 | van der Waals | B | 81-84 S: -1 | 84 | ILE | CD1 | C5 | B | 202 | 3.81 | van der Waals | B | 81-84 S: -1 | 84 | ILE | CD1 | C6 | B | 202 | 3.85 | van der Waals | B | 81-84 S: -1 | 84 | ILE | CD1 | O5 | B | 202 | 3.83 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CB | O6 | B | 202 | 3.8 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CG | C3 | B | 202 | 3.98 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CG | C4 | B | 202 | 3.88 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CG | O6 | B | 202 | 3.99 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CD1 | C3 | B | 202 | 3.73 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CD2 | C5 | B | 202 | 3.77 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CD2 | O6 | B | 202 | 3.67 | van der Waals | B | 90-93 H: 5 | 90 | TYR | CE1 | C3 | B | 202 | 3.97 | van der Waals | B | 90-93 H: 5 | 92 | ASP | CG | C4 | B | 202 | 3.89 | van der Waals | B | 90-93 H: 5 | 92 | ASP | CG | O4 | B | 202 | 3.56 | van der Waals | B | 90-93 H: 5 | 92 | ASP | CG | O6 | B | 202 | 3.66 | van der Waals | B | 90-93 H: 5 | 92 | ASP | OD1 | C4 | B | 202 | 3.66 | van der Waals | B | 90-93 H: 5 | 92 | ASP | OD1 | C6 | B | 202 | 3.52 | van der Waals | B | 90-93 H: 5 | 92 | ASP | OD1 | O4 | B | 202 | 3.73 | H.Bond | B | 90-93 H: 5 | 92 | ASP | OD1 | O6 | B | 202 | 2.67 | H.Bond | B | 90-93 H: 5 | 92 | ASP | OD2 | C4 | B | 202 | 3.34 | van der Waals | B | 90-93 H: 5 | 92 | ASP | OD2 | O4 | B | 202 | 2.63 | H.Bond | B | 90-93 H: 5 | 92 | ASP | OD2 | O6 | B | 202 | 3.93 | H.Bond | B | 90-93 H: 5 | 93 | ASN | CG | O6 | B | 202 | 3.8 | van der Waals | B | 90-93 H: 5 | 93 | ASN | ND2 | O6 | B | 202 | 2.78 | H.Bond | |
| 5 / D |
> Structure: SLSH
+2w
> Sequence: FRIYDN
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NGA /(201) |
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> Graphics rep1:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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D | 70-73 S: 0 | 72 | PHE | CB | C6 | D | 201 | 3.85 | van der Waals | D | 70-73 S: 0 | 72 | PHE | CB | O6 | D | 201 | 3.44 | van der Waals | D | 70-73 S: 0 | 72 | PHE | CG | C6 | D | 201 | 3.54 | van der Waals | D | 70-73 S: 0 | 72 | PHE | CG | O6 | D | 201 | 3.71 | van der Waals | D | 70-73 S: 0 | 72 | PHE | CD2 | C6 | D | 201 | 3.34 | van der Waals | D | 70-73 S: 0 | 72 | PHE | CD2 | O6 | D | 201 | 3.71 | van der Waals | D | 70-73 S: 0 | 72 | PHE | CE2 | C6 | D | 201 | 3.86 | van der Waals | D | No SSE | 74 | ARG | CD | O4 | D | 201 | 3.56 | van der Waals | D | No SSE | 74 | ARG | NH1 | C1 | D | 201 | 3.86 | H.Bond | D | No SSE | 74 | ARG | NH1 | C4 | D | 201 | 3.9 | H.Bond | D | No SSE | 74 | ARG | NH1 | C5 | D | 201 | 3.75 | H.Bond | D | No SSE | 74 | ARG | NH1 | C6 | D | 201 | 3.8 | H.Bond | D | No SSE | 74 | ARG | NH1 | O1 | D | 201 | 3.92 | H.Bond | D | No SSE | 74 | ARG | NH1 | O4 | D | 201 | 2.99 | H.Bond | D | No SSE | 74 | ARG | NH1 | O5 | D | 201 | 3.04 | H.Bond | D | 81-84 S: -1 | 84 | ILE | CG2 | O6 | D | 201 | 3.6 | van der Waals | D | 81-84 S: -1 | 84 | ILE | CD1 | C5 | D | 201 | 3.81 | van der Waals | D | 81-84 S: -1 | 84 | ILE | CD1 | C6 | D | 201 | 3.86 | van der Waals | D | 81-84 S: -1 | 84 | ILE | CD1 | O5 | D | 201 | 3.69 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CB | O6 | D | 201 | 3.61 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CG | C4 | D | 201 | 3.93 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CG | C5 | D | 201 | 3.9 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CG | O6 | D | 201 | 3.82 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CD1 | C3 | D | 201 | 3.71 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CD2 | C5 | D | 201 | 3.86 | van der Waals | D | 90-93 H: 5 | 90 | TYR | CD2 | O6 | D | 201 | 3.65 | van der Waals | D | 90-93 H: 5 | 92 | ASP | CG | C4 | D | 201 | 3.87 | van der Waals | D | 90-93 H: 5 | 92 | ASP | CG | O4 | D | 201 | 3.53 | van der Waals | D | 90-93 H: 5 | 92 | ASP | CG | O6 | D | 201 | 3.69 | van der Waals | D | 90-93 H: 5 | 92 | ASP | OD1 | C4 | D | 201 | 3.62 | van der Waals | D | 90-93 H: 5 | 92 | ASP | OD1 | C6 | D | 201 | 3.54 | van der Waals | D | 90-93 H: 5 | 92 | ASP | OD1 | O4 | D | 201 | 3.69 | H.Bond | D | 90-93 H: 5 | 92 | ASP | OD1 | O6 | D | 201 | 2.68 | H.Bond | D | 90-93 H: 5 | 92 | ASP | OD2 | C4 | D | 201 | 3.36 | van der Waals | D | 90-93 H: 5 | 92 | ASP | OD2 | O4 | D | 201 | 2.63 | H.Bond | D | 90-93 H: 5 | 92 | ASP | OD2 | O6 | D | 201 | 3.97 | H.Bond | D | 90-93 H: 5 | 93 | ASN | CG | O6 | D | 201 | 3.84 | van der Waals | D | 90-93 H: 5 | 93 | ASN | ND2 | O6 | D | 201 | 2.83 | H.Bond | D | Water | 364 | HOH | O | O3 | D | 201 | 3.01 | H.Bond | D | Water | 364 | HOH | O | O4 | D | 201 | 3.4 | H.Bond | D | Water | 421 | HOH | O | C4 | D | 201 | 3.74 | van der Waals | D | Water | 421 | HOH | O | O3 | D | 201 | 3.44 | H.Bond | |
| 6 / D |
> Structure: SLSH
+6w
> Sequence: YRYYDQ
|
NGA /(202) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
D | 23-26 S: 0 | 25 | TYR | CB | C6 | D | 202 | 3.82 | van der Waals | D | 23-26 S: 0 | 25 | TYR | CB | O6 | D | 202 | 3.67 | van der Waals | D | 23-26 S: 0 | 25 | TYR | CG | C6 | D | 202 | 3.67 | van der Waals | D | 23-26 S: 0 | 25 | TYR | CD2 | C6 | D | 202 | 3.6 | van der Waals | D | No SSE | 27 | ARG | CD | O4 | D | 202 | 3.5 | van der Waals | D | No SSE | 27 | ARG | CZ | O4 | D | 202 | 3.93 | van der Waals | D | No SSE | 27 | ARG | NH2 | C1 | D | 202 | 3.8 | H.Bond | D | No SSE | 27 | ARG | NH2 | C2 | D | 202 | 3.74 | H.Bond | D | No SSE | 27 | ARG | NH2 | C4 | D | 202 | 3.86 | H.Bond | D | No SSE | 27 | ARG | NH2 | C5 | D | 202 | 3.91 | H.Bond | D | No SSE | 27 | ARG | NH2 | O1 | D | 202 | 3.83 | H.Bond | D | No SSE | 27 | ARG | NH2 | O4 | D | 202 | 2.9 | H.Bond | D | No SSE | 27 | ARG | NH2 | O5 | D | 202 | 3.21 | H.Bond | D | 34-37 S: -1 | 37 | TYR | CG | C6 | D | 202 | 3.74 | van der Waals | D | 34-37 S: -1 | 37 | TYR | CD1 | C6 | D | 202 | 3.85 | van der Waals | D | 34-37 S: -1 | 37 | TYR | CD1 | O6 | D | 202 | 3.82 | van der Waals | D | 34-37 S: -1 | 37 | TYR | CD2 | O5 | D | 202 | 3.74 | van der Waals | D | 34-37 S: -1 | 37 | TYR | CE2 | C1 | D | 202 | 3.83 | van der Waals | D | 34-37 S: -1 | 37 | TYR | CE2 | O5 | D | 202 | 3.59 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CB | O6 | D | 202 | 3.72 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CG | C4 | D | 202 | 3.91 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CD2 | C4 | D | 202 | 3.92 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CD2 | C5 | D | 202 | 3.85 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CD2 | O6 | D | 202 | 3.89 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CE1 | C3 | D | 202 | 3.92 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CE2 | C3 | D | 202 | 3.99 | van der Waals | D | 42-45 H: 5 | 42 | TYR | CZ | C3 | D | 202 | 3.88 | van der Waals | D | 42-45 H: 5 | 44 | ASP | CG | O4 | D | 202 | 3.58 | van der Waals | D | 42-45 H: 5 | 44 | ASP | CG | O6 | D | 202 | 3.64 | van der Waals | D | 42-45 H: 5 | 44 | ASP | OD1 | C4 | D | 202 | 3.87 | van der Waals | D | 42-45 H: 5 | 44 | ASP | OD1 | C6 | D | 202 | 3.54 | van der Waals | D | 42-45 H: 5 | 44 | ASP | OD1 | O4 | D | 202 | 3.8 | H.Bond | D | 42-45 H: 5 | 44 | ASP | OD1 | O6 | D | 202 | 2.68 | H.Bond | D | 42-45 H: 5 | 44 | ASP | OD2 | C4 | D | 202 | 3.41 | van der Waals | D | 42-45 H: 5 | 44 | ASP | OD2 | C6 | D | 202 | 3.96 | van der Waals | D | 42-45 H: 5 | 44 | ASP | OD2 | O4 | D | 202 | 2.6 | H.Bond | D | 42-45 H: 5 | 44 | ASP | OD2 | O6 | D | 202 | 3.86 | H.Bond | D | 42-45 H: 5 | 45 | GLN | CG | O6 | D | 202 | 3.41 | van der Waals | D | 42-45 H: 5 | 45 | GLN | CD | O6 | D | 202 | 3.56 | van der Waals | D | 42-45 H: 5 | 45 | GLN | NE2 | C6 | D | 202 | 3.95 | H.Bond | D | 42-45 H: 5 | 45 | GLN | NE2 | O6 | D | 202 | 2.79 | H.Bond | D | Water | 358 | HOH | O | C3 | D | 202 | 3.79 | van der Waals | D | Water | 358 | HOH | O | O3 | D | 202 | 2.77 | H.Bond | D | Water | 358 | HOH | O | O4 | D | 202 | 3.2 | H.Bond | D | Water | 359 | HOH | O | O4 | D | 202 | 3.87 | H.Bond | D | Water | 373 | HOH | O | O1 | D | 202 | 3.9 | H.Bond | D | Water | 384 | HOH | O | C7 | D | 202 | 3.82 | van der Waals | D | Water | 384 | HOH | O | O7 | D | 202 | 2.78 | H.Bond | D | Water | 385 | HOH | O | C7 | D | 202 | 3.49 | van der Waals | D | Water | 385 | HOH | O | C8 | D | 202 | 3.7 | van der Waals | D | Water | 385 | HOH | O | O7 | D | 202 | 3.1 | H.Bond | D | Water | 436 | HOH | O | C3 | D | 202 | 3.83 | van der Waals | D | Water | 436 | HOH | O | C4 | D | 202 | 3.97 | van der Waals | D | Water | 436 | HOH | O | O3 | D | 202 | 2.78 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
3 | 4G9N | Crystal structure of the Rhizoctonia solani agglutinin in complex with N'-acetyl-galactosamine | X-RAY | 2.20 | 0.154
|
---|
| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SLHSLHL
+2w
> Sequence: DLWRQYHNQE
|
NGA /(201) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | 20-23 S: 0 | 22 | ASP | CG | C4 | A | 201 | 3.9 | van der Waals | A | 20-23 S: 0 | 22 | ASP | CG | O3 | A | 201 | 3.34 | van der Waals | A | 20-23 S: 0 | 22 | ASP | CG | O4 | A | 201 | 3.49 | van der Waals | A | 20-23 S: 0 | 22 | ASP | OD1 | C3 | A | 201 | 3.59 | van der Waals | A | 20-23 S: 0 | 22 | ASP | OD1 | C4 | A | 201 | 3.78 | van der Waals | A | 20-23 S: 0 | 22 | ASP | OD1 | O3 | A | 201 | 2.5 | H.Bond | A | 20-23 S: 0 | 22 | ASP | OD1 | O4 | A | 201 | 3.67 | H.Bond | A | 20-23 S: 0 | 22 | ASP | OD2 | C3 | A | 201 | 3.94 | van der Waals | A | 20-23 S: 0 | 22 | ASP | OD2 | C4 | A | 201 | 3.3 | van der Waals | A | 20-23 S: 0 | 22 | ASP | OD2 | O3 | A | 201 | 3.43 | H.Bond | A | 20-23 S: 0 | 22 | ASP | OD2 | O4 | A | 201 | 2.57 | H.Bond | A | 20-23 S: 0 | 23 | LEU | O | O4 | A | 201 | 3.52 | H.Bond | A | No SSE | 24 | TRP | CA | O4 | A | 201 | 3.55 | van der Waals | A | No SSE | 24 | TRP | C | O4 | A | 201 | 3.74 | van der Waals | A | No SSE | 24 | TRP | CG | C6 | A | 201 | 3.89 | van der Waals | A | No SSE | 24 | TRP | CD1 | C6 | A | 201 | 3.3 | van der Waals | A | No SSE | 24 | TRP | CD1 | O6 | A | 201 | 3.28 | van der Waals | A | No SSE | 24 | TRP | NE1 | C6 | A | 201 | 3.56 | H.Bond | A | No SSE | 24 | TRP | NE1 | O6 | A | 201 | 3.74 | H.Bond | A | 25-27 H: 5 | 25 | ARG | N | C6 | A | 201 | 3.95 | H.Bond | A | 25-27 H: 5 | 25 | ARG | N | O4 | A | 201 | 2.96 | H.Bond | A | 25-27 H: 5 | 25 | ARG | N | O5 | A | 201 | 3.89 | H.Bond | A | 25-27 H: 5 | 25 | ARG | CA | O4 | A | 201 | 3.89 | van der Waals | A | 25-27 H: 5 | 25 | ARG | CG | O1 | A | 201 | 3.99 | van der Waals | A | 25-27 H: 5 | 25 | ARG | CG | O5 | A | 201 | 3.47 | van der Waals | A | 32-37 S: -1 | 35 | GLN | CD | O6 | A | 201 | 3.75 | van der Waals | A | 32-37 S: -1 | 35 | GLN | OE1 | O6 | A | 201 | 3.91 | H.Bond | A | 32-37 S: -1 | 35 | GLN | NE2 | C4 | A | 201 | 3.74 | H.Bond | A | 32-37 S: -1 | 35 | GLN | NE2 | C6 | A | 201 | 3.61 | H.Bond | A | 32-37 S: -1 | 35 | GLN | NE2 | O4 | A | 201 | 3.5 | H.Bond | A | 32-37 S: -1 | 35 | GLN | NE2 | O6 | A | 201 | 2.78 | H.Bond | A | 32-37 S: -1 | 37 | TYR | CD1 | O3 | A | 201 | 3.9 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CD2 | C4 | A | 201 | 3.82 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CE1 | C3 | A | 201 | 3.74 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CE2 | C3 | A | 201 | 3.99 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CE2 | C4 | A | 201 | 3.6 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CE2 | C5 | A | 201 | 3.8 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CE2 | O6 | A | 201 | 3.63 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CZ | C3 | A | 201 | 3.72 | van der Waals | A | 32-37 S: -1 | 37 | TYR | CZ | C4 | A | 201 | 3.85 | van der Waals | A | No SSE | 40 | HIS | CG | C8 | A | 201 | 3.89 | van der Waals | A | No SSE | 40 | HIS | ND1 | C8 | A | 201 | 3.88 | H.Bond | A | No SSE | 40 | HIS | CD2 | C7 | A | 201 | 3.76 | van der Waals | A | No SSE | 40 | HIS | CD2 | C8 | A | 201 | 3.58 | van der Waals | A | No SSE | 40 | HIS | CD2 | N2 | A | 201 | 3.66 | H.Bond | A | No SSE | 40 | HIS | CD2 | O3 | A | 201 | 3.56 | van der Waals | A | No SSE | 40 | HIS | CE1 | C7 | A | 201 | 3.47 | van der Waals | A | No SSE | 40 | HIS | CE1 | C8 | A | 201 | 3.6 | van der Waals | A | No SSE | 40 | HIS | CE1 | N2 | A | 201 | 3.91 | H.Bond | A | No SSE | 40 | HIS | CE1 | O3 | A | 201 | 3.49 | van der Waals | A | No SSE | 40 | HIS | CE1 | O7 | A | 201 | 3.63 | van der Waals | A | No SSE | 40 | HIS | NE2 | C2 | A | 201 | 3.77 | H.Bond | A | No SSE | 40 | HIS | NE2 | C3 | A | 201 | 3.48 | H.Bond | A | No SSE | 40 | HIS | NE2 | C7 | A | 201 | 3.1 | H.Bond | A | No SSE | 40 | HIS | NE2 | C8 | A | 201 | 3.39 | H.Bond | A | No SSE | 40 | HIS | NE2 | N2 | A | 201 | 3.1 | H.Bond | A | No SSE | 40 | HIS | NE2 | O3 | A | 201 | 2.57 | H.Bond | A | No SSE | 40 | HIS | NE2 | O7 | A | 201 | 3.58 | H.Bond | A | 42-45 H: 5 | 44 | ASN | CG | O3 | A | 201 | 3.84 | van der Waals | A | 42-45 H: 5 | 44 | ASN | CG | O7 | A | 201 | 3.91 | van der Waals | A | 42-45 H: 5 | 44 | ASN | OD1 | O3 | A | 201 | 3.94 | H.Bond | A | 42-45 H: 5 | 44 | ASN | OD1 | O7 | A | 201 | 3.54 | H.Bond | A | 42-45 H: 5 | 44 | ASN | ND2 | C2 | A | 201 | 3.82 | H.Bond | A | 42-45 H: 5 | 44 | ASN | ND2 | C3 | A | 201 | 3.71 | H.Bond | A | 42-45 H: 5 | 44 | ASN | ND2 | O3 | A | 201 | 2.91 | H.Bond | A | 42-45 H: 5 | 44 | ASN | ND2 | O4 | A | 201 | 3.26 | H.Bond | A | 42-45 H: 5 | 44 | ASN | ND2 | O7 | A | 201 | 3.84 | H.Bond | A | 42-45 H: 5 | 45 | GLN | NE2 | O3 | A | 201 | 3.9 | H.Bond | A | No SSE | 121 | GLU | CG | O6 | A | 201 | 3.21 | van der Waals | A | No SSE | 121 | GLU | CD | O6 | A | 201 | 3.21 | van der Waals | A | No SSE | 121 | GLU | OE2 | C6 | A | 201 | 3.42 | van der Waals | A | No SSE | 121 | GLU | OE2 | O6 | A | 201 | 2.53 | H.Bond | A | Water | 356 | HOH | O | O7 | A | 201 | 3.79 | H.Bond | A | Water | 377 | HOH | O | C1 | A | 201 | 3.74 | van der Waals | A | Water | 377 | HOH | O | C2 | A | 201 | 3.81 | van der Waals | A | Water | 377 | HOH | O | C7 | A | 201 | 3.83 | van der Waals | A | Water | 377 | HOH | O | C8 | A | 201 | 3.74 | van der Waals | A | Water | 377 | HOH | O | N2 | A | 201 | 2.98 | H.Bond | |
| 2 / A |
> Structure: LSHSH
+3w
> Sequence: SDESIYN
|
NGA /(202) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 78 | SER | OG | C7 | A | 202 | 3.8 | van der Waals | A | No SSE | 78 | SER | OG | C8 | A | 202 | 3.52 | van der Waals | A | No SSE | 78 | SER | OG | O7 | A | 202 | 3.23 | H.Bond | A | 106-113 S: -1 | 112 | ASP | CG | O3 | A | 202 | 3.09 | van der Waals | A | 106-113 S: -1 | 112 | ASP | CG | O4 | A | 202 | 3.81 | van der Waals | A | 106-113 S: -1 | 112 | ASP | OD1 | C3 | A | 202 | 3.9 | van der Waals | A | 106-113 S: -1 | 112 | ASP | OD1 | C4 | A | 202 | 3.7 | van der Waals | A | 106-113 S: -1 | 112 | ASP | OD1 | O3 | A | 202 | 2.94 | H.Bond | A | 106-113 S: -1 | 112 | ASP | OD1 | O4 | A | 202 | 2.98 | H.Bond | A | 106-113 S: -1 | 112 | ASP | OD2 | C3 | A | 202 | 3.55 | van der Waals | A | 106-113 S: -1 | 112 | ASP | OD2 | C4 | A | 202 | 3.71 | van der Waals | A | 106-113 S: -1 | 112 | ASP | OD2 | O3 | A | 202 | 2.73 | H.Bond | A | 106-113 S: -1 | 112 | ASP | OD2 | O4 | A | 202 | 3.83 | H.Bond | A | 115-117 H: 5 | 115 | GLU | N | C3 | A | 202 | 3.16 | H.Bond | A | 115-117 H: 5 | 115 | GLU | N | C4 | A | 202 | 3.64 | H.Bond | A | 115-117 H: 5 | 115 | GLU | N | C5 | A | 202 | 3.87 | H.Bond | A | 115-117 H: 5 | 115 | GLU | N | O3 | A | 202 | 3.94 | H.Bond | A | 115-117 H: 5 | 115 | GLU | CA | C1 | A | 202 | 3.95 | van der Waals | A | 115-117 H: 5 | 115 | GLU | CA | C3 | A | 202 | 3.86 | van der Waals | A | 115-117 H: 5 | 115 | GLU | CA | C5 | A | 202 | 3.67 | van der Waals | A | 115-117 H: 5 | 115 | GLU | C | O6 | A | 202 | 3.8 | van der Waals | A | 115-117 H: 5 | 115 | GLU | CG | C1 | A | 202 | 3.72 | van der Waals | A | 115-117 H: 5 | 115 | GLU | CG | N2 | A | 202 | 3.74 | H.Bond | A | 115-117 H: 5 | 116 | SER | N | O6 | A | 202 | 3.69 | H.Bond | A | 115-117 H: 5 | 116 | SER | CB | O6 | A | 202 | 3.61 | van der Waals | A | 115-117 H: 5 | 116 | SER | OG | C6 | A | 202 | 3.95 | van der Waals | A | 115-117 H: 5 | 116 | SER | OG | O6 | A | 202 | 2.57 | H.Bond | A | 122-128 S: -1 | 125 | ILE | CD1 | O3 | A | 202 | 3.53 | van der Waals | A | 122-128 S: -1 | 125 | ILE | CD1 | O7 | A | 202 | 3.38 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CG | O3 | A | 202 | 3.88 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CD1 | O7 | A | 202 | 3.31 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CD2 | O3 | A | 202 | 3.82 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CD2 | O4 | A | 202 | 3.7 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CE1 | C7 | A | 202 | 3.99 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CE1 | O7 | A | 202 | 2.91 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CE2 | O4 | A | 202 | 3.71 | van der Waals | A | 122-128 S: -1 | 127 | TYR | CZ | O7 | A | 202 | 3.39 | van der Waals | A | 122-128 S: -1 | 127 | TYR | OH | O7 | A | 202 | 3.83 | H.Bond | A | 132-135 H: 5 | 134 | ASN | CG | O6 | A | 202 | 3.61 | van der Waals | A | 132-135 H: 5 | 134 | ASN | OD1 | C6 | A | 202 | 3.96 | van der Waals | A | 132-135 H: 5 | 134 | ASN | OD1 | O6 | A | 202 | 3.56 | H.Bond | A | 132-135 H: 5 | 134 | ASN | ND2 | C4 | A | 202 | 3.08 | H.Bond | A | 132-135 H: 5 | 134 | ASN | ND2 | C5 | A | 202 | 3.92 | H.Bond | A | 132-135 H: 5 | 134 | ASN | ND2 | C6 | A | 202 | 3.92 | H.Bond | A | 132-135 H: 5 | 134 | ASN | ND2 | O4 | A | 202 | 3.3 | H.Bond | A | 132-135 H: 5 | 134 | ASN | ND2 | O6 | A | 202 | 3.58 | H.Bond | A | Water | 324 | HOH | O | O4 | A | 202 | 3 | H.Bond | A | Water | 402 | HOH | O | C1 | A | 202 | 3.78 | van der Waals | A | Water | 402 | HOH | O | C7 | A | 202 | 3.63 | van der Waals | A | Water | 402 | HOH | O | C8 | A | 202 | 3.12 | van der Waals | A | Water | 402 | HOH | O | N2 | A | 202 | 3.22 | H.Bond | A | Water | 402 | HOH | O | O1 | A | 202 | 3.06 | H.Bond | A | Water | 418 | HOH | O | C1 | A | 202 | 3.12 | van der Waals | A | Water | 418 | HOH | O | O1 | A | 202 | 2.14 | H.Bond | A | Water | 418 | HOH | O | O5 | A | 202 | 3.48 | H.Bond | |
| 3 / B |
> Structure: SLHSLHL
+3w
> Sequence: DLWRQYHNQE
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NGA /(201) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | 20-23 S: 0 | 22 | ASP | CG | O3 | B | 201 | 3.46 | van der Waals | B | 20-23 S: 0 | 22 | ASP | CG | O4 | B | 201 | 3.63 | van der Waals | B | 20-23 S: 0 | 22 | ASP | OD1 | C4 | B | 201 | 3.5 | van der Waals | B | 20-23 S: 0 | 22 | ASP | OD1 | O3 | B | 201 | 3.68 | H.Bond | B | 20-23 S: 0 | 22 | ASP | OD1 | O4 | B | 201 | 2.83 | H.Bond | B | 20-23 S: 0 | 22 | ASP | OD2 | C3 | B | 201 | 3.56 | van der Waals | B | 20-23 S: 0 | 22 | ASP | OD2 | C4 | B | 201 | 3.67 | van der Waals | B | 20-23 S: 0 | 22 | ASP | OD2 | O3 | B | 201 | 2.49 | H.Bond | B | 20-23 S: 0 | 22 | ASP | OD2 | O4 | B | 201 | 3.63 | H.Bond | B | 20-23 S: 0 | 23 | LEU | C | O4 | B | 201 | 3.98 | van der Waals | B | 20-23 S: 0 | 23 | LEU | O | O4 | B | 201 | 3.44 | H.Bond | B | No SSE | 24 | TRP | N | O4 | B | 201 | 3.98 | H.Bond | B | No SSE | 24 | TRP | CA | O4 | B | 201 | 3.38 | van der Waals | B | No SSE | 24 | TRP | C | O4 | B | 201 | 3.51 | van der Waals | B | No SSE | 24 | TRP | CG | C6 | B | 201 | 3.93 | van der Waals | B | No SSE | 24 | TRP | CD1 | C6 | B | 201 | 3.32 | van der Waals | B | No SSE | 24 | TRP | CD1 | O6 | B | 201 | 3.12 | van der Waals | B | No SSE | 24 | TRP | NE1 | C6 | B | 201 | 3.48 | H.Bond | B | No SSE | 24 | TRP | NE1 | O6 | B | 201 | 3.49 | H.Bond | B | 25-27 H: 5 | 25 | ARG | N | C4 | B | 201 | 3.86 | H.Bond | B | 25-27 H: 5 | 25 | ARG | N | C5 | B | 201 | 3.97 | H.Bond | B | 25-27 H: 5 | 25 | ARG | N | C6 | B | 201 | 3.75 | H.Bond | B | 25-27 H: 5 | 25 | ARG | N | O4 | B | 201 | 2.71 | H.Bond | B | 25-27 H: 5 | 25 | ARG | N | O5 | B | 201 | 3.63 | H.Bond | B | 25-27 H: 5 | 25 | ARG | CA | O1 | B | 201 | 3.9 | van der Waals | B | 25-27 H: 5 | 25 | ARG | CA | O4 | B | 201 | 3.62 | van der Waals | B | 25-27 H: 5 | 25 | ARG | CA | O5 | B | 201 | 3.65 | van der Waals | B | 25-27 H: 5 | 25 | ARG | CB | O5 | B | 201 | 3.88 | van der Waals | B | 25-27 H: 5 | 25 | ARG | CG | C6 | B | 201 | 3.65 | van der Waals | B | 25-27 H: 5 | 25 | ARG | CG | O5 | B | 201 | 3.28 | van der Waals | B | 25-27 H: 5 | 25 | ARG | CD | O5 | B | 201 | 3.63 | van der Waals | B | 32-37 S: -1 | 35 | GLN | CD | O6 | B | 201 | 3.71 | van der Waals | B | 32-37 S: -1 | 35 | GLN | OE1 | O6 | B | 201 | 3.83 | H.Bond | B | 32-37 S: -1 | 35 | GLN | NE2 | C4 | B | 201 | 3.73 | H.Bond | B | 32-37 S: -1 | 35 | GLN | NE2 | C6 | B | 201 | 3.69 | H.Bond | B | 32-37 S: -1 | 35 | GLN | NE2 | O4 | B | 201 | 3.42 | H.Bond | B | 32-37 S: -1 | 35 | GLN | NE2 | O6 | B | 201 | 2.77 | H.Bond | B | 32-37 S: -1 | 37 | TYR | CD2 | C4 | B | 201 | 3.91 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CD2 | O6 | B | 201 | 3.99 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CE1 | C3 | B | 201 | 3.91 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CE2 | C4 | B | 201 | 3.58 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CE2 | C5 | B | 201 | 3.82 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CE2 | O6 | B | 201 | 3.47 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CZ | C3 | B | 201 | 3.81 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CZ | C4 | B | 201 | 3.79 | van der Waals | B | 32-37 S: -1 | 37 | TYR | CZ | C5 | B | 201 | 3.98 | van der Waals | B | 32-37 S: -1 | 37 | TYR | OH | C5 | B | 201 | 3.91 | van der Waals | B | No SSE | 40 | HIS | CD2 | O3 | B | 201 | 3.92 | van der Waals | B | No SSE | 40 | HIS | CE1 | C7 | B | 201 | 3.9 | van der Waals | B | No SSE | 40 | HIS | CE1 | C8 | B | 201 | 3.45 | van der Waals | B | No SSE | 40 | HIS | CE1 | O3 | B | 201 | 3.8 | van der Waals | B | No SSE | 40 | HIS | NE2 | C3 | B | 201 | 3.83 | H.Bond | B | No SSE | 40 | HIS | NE2 | C7 | B | 201 | 3.73 | H.Bond | B | No SSE | 40 | HIS | NE2 | C8 | B | 201 | 3.57 | H.Bond | B | No SSE | 40 | HIS | NE2 | N2 | B | 201 | 3.48 | H.Bond | B | No SSE | 40 | HIS | NE2 | O3 | B | 201 | 2.92 | H.Bond | B | 42-45 H: 5 | 44 | ASN | CG | O3 | B | 201 | 3.77 | van der Waals | B | 42-45 H: 5 | 44 | ASN | CG | O7 | B | 201 | 3.47 | van der Waals | B | 42-45 H: 5 | 44 | ASN | OD1 | C7 | B | 201 | 3.58 | van der Waals | B | 42-45 H: 5 | 44 | ASN | OD1 | C8 | B | 201 | 3.98 | van der Waals | B | 42-45 H: 5 | 44 | ASN | OD1 | O3 | B | 201 | 3.84 | H.Bond | B | 42-45 H: 5 | 44 | ASN | OD1 | O7 | B | 201 | 3.28 | H.Bond | B | 42-45 H: 5 | 44 | ASN | ND2 | C2 | B | 201 | 3.68 | H.Bond | B | 42-45 H: 5 | 44 | ASN | ND2 | C3 | B | 201 | 3.68 | H.Bond | B | 42-45 H: 5 | 44 | ASN | ND2 | O3 | B | 201 | 2.86 | H.Bond | B | 42-45 H: 5 | 44 | ASN | ND2 | O4 | B | 201 | 3.39 | H.Bond | B | 42-45 H: 5 | 44 | ASN | ND2 | O7 | B | 201 | 3.58 | H.Bond | B | 42-45 H: 5 | 45 | GLN | NE2 | O3 | B | 201 | 3.84 | H.Bond | B | No SSE | 121 | GLU | CG | O6 | B | 201 | 3.5 | van der Waals | B | No SSE | 121 | GLU | CD | O6 | B | 201 | 3.47 | van der Waals | B | No SSE | 121 | GLU | OE2 | C6 | B | 201 | 3.54 | van der Waals | B | No SSE | 121 | GLU | OE2 | O6 | B | 201 | 2.69 | H.Bond | B | Water | 351 | HOH | O | C1 | B | 201 | 3.96 | van der Waals | B | Water | 351 | HOH | O | C2 | B | 201 | 3.75 | van der Waals | B | Water | 351 | HOH | O | C3 | B | 201 | 3.93 | van der Waals | B | Water | 351 | HOH | O | C7 | B | 201 | 3.7 | van der Waals | B | Water | 351 | HOH | O | C8 | B | 201 | 3.61 | van der Waals | B | Water | 351 | HOH | O | N2 | B | 201 | 2.85 | H.Bond | B | Water | 358 | HOH | O | C1 | B | 201 | 3.83 | van der Waals | B | Water | 358 | HOH | O | C7 | B | 201 | 3.7 | van der Waals | B | Water | 358 | HOH | O | O1 | B | 201 | 2.6 | H.Bond | B | Water | 358 | HOH | O | O7 | B | 201 | 2.98 | H.Bond | B | Water | 373 | HOH | O | C5 | B | 201 | 3.69 | van der Waals | B | Water | 373 | HOH | O | C6 | B | 201 | 3.8 | van der Waals | B | Water | 373 | HOH | O | O6 | B | 201 | 3.59 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 3COR | Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with N-acetylgalactos | X-RAY | 3.10 | 0.208
|
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SLLLL
> Sequence: HMTLS
|
NGA /(172) |
[+] |
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> Graphics rep1:
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[+] |
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> Graphics rep2:
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[+] |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
---|
A | 30-37 S: 1 | 37 | HIS | ND1 | O6 | A | 172 | 3.87 | H.Bond | A | 30-37 S: 1 | 37 | HIS | CE1 | C6 | A | 172 | 3.85 | van der Waals | A | 30-37 S: 1 | 37 | HIS | CE1 | O6 | A | 172 | 2.73 | van der Waals | A | 30-37 S: 1 | 37 | HIS | NE2 | O6 | A | 172 | 3.14 | H.Bond | A | No SSE | 112 | MET | CE | O6 | A | 172 | 3.69 | van der Waals | A | No SSE | 152 | THR | CB | O4 | A | 172 | 3.95 | van der Waals | A | No SSE | 152 | THR | OG1 | C4 | A | 172 | 2.92 | van der Waals | A | No SSE | 152 | THR | OG1 | C5 | A | 172 | 3.54 | van der Waals | A | No SSE | 152 | THR | OG1 | C6 | A | 172 | 3.12 | van der Waals | A | No SSE | 152 | THR | OG1 | O4 | A | 172 | 3.13 | H.Bond | A | No SSE | 153 | LEU | N | C6 | A | 172 | 3.16 | H.Bond | A | No SSE | 153 | LEU | N | O4 | A | 172 | 3.52 | H.Bond | A | No SSE | 153 | LEU | CA | C6 | A | 172 | 3.31 | van der Waals | A | No SSE | 153 | LEU | CA | O6 | A | 172 | 3.68 | van der Waals | A | No SSE | 153 | LEU | C | C6 | A | 172 | 3.13 | van der Waals | A | No SSE | 153 | LEU | C | O6 | A | 172 | 3.14 | van der Waals | A | No SSE | 153 | LEU | O | C6 | A | 172 | 3.95 | van der Waals | A | No SSE | 153 | LEU | O | O6 | A | 172 | 3.53 | H.Bond | A | No SSE | 153 | LEU | CB | C6 | A | 172 | 3.16 | van der Waals | A | No SSE | 153 | LEU | CB | O6 | A | 172 | 3.24 | van der Waals | A | No SSE | 153 | LEU | CG | C6 | A | 172 | 3.97 | van der Waals | A | No SSE | 153 | LEU | CD2 | C6 | A | 172 | 3.56 | van der Waals | A | No SSE | 153 | LEU | CD2 | O4 | A | 172 | 3.01 | van der Waals | A | No SSE | 153 | LEU | CD2 | O5 | A | 172 | 3.94 | van der Waals | A | No SSE | 154 | SER | N | C6 | A | 172 | 2.75 | H.Bond | A | No SSE | 154 | SER | N | O6 | A | 172 | 3.04 | H.Bond | A | No SSE | 154 | SER | CA | C6 | A | 172 | 3.34 | van der Waals | A | No SSE | 154 | SER | CA | O6 | A | 172 | 3.31 | van der Waals | |