There are 3 GlcSFMs: |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 8XIA | X-RAY ANALYSIS OF D-XYLOSE ISOMERASE AT 1.9 ANGSTROMS: NATIVE ENZYME IN COMPLEX WITH SUBSTRATE AND W | X-RAY | 1.90 | 0.140
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: HSSLSLLHSL
+5w
> Sequence: WHTFVWEEHDD
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XLS /(389) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 15-19 H: 1 | 16 | TRP | CD1 | O4 | A | 389 | 3.95 | van der Waals | A | 15-19 H: 1 | 16 | TRP | NE1 | O4 | A | 389 | 3.02 | H.Bond | A | 15-19 H: 1 | 16 | TRP | CE2 | O4 | A | 389 | 3.53 | van der Waals | A | 15-19 H: 1 | 16 | TRP | CZ2 | O4 | A | 389 | 3.66 | van der Waals | A | 50-54 S: 1 | 54 | HIS | CD2 | O1 | A | 389 | 3.75 | van der Waals | A | 50-54 S: 1 | 54 | HIS | CE1 | C1 | A | 389 | 3.48 | van der Waals | A | 50-54 S: 1 | 54 | HIS | NE2 | C1 | A | 389 | 2.93 | H.Bond | A | 50-54 S: 1 | 54 | HIS | NE2 | C2 | A | 389 | 3.95 | H.Bond | A | 50-54 S: 1 | 54 | HIS | NE2 | O1 | A | 389 | 3.03 | H.Bond | A | 88-90 S: 1 | 90 | THR | OG1 | O2 | A | 389 | 3.87 | H.Bond | A | No SSE | 94 | PHE | CE2 | O1 | A | 389 | 3.56 | van der Waals | A | 133-136 S: 1 | 135 | VAL | CG1 | O2 | A | 389 | 3.46 | van der Waals | A | No SSE | 137 | TRP | CB | C2 | A | 389 | 3.99 | van der Waals | A | No SSE | 137 | TRP | CB | O1 | A | 389 | 3.49 | van der Waals | A | No SSE | 137 | TRP | CB | O2 | A | 389 | 3.33 | van der Waals | A | No SSE | 137 | TRP | CD2 | C5 | A | 389 | 3.89 | van der Waals | A | No SSE | 137 | TRP | CE3 | C1 | A | 389 | 3.94 | van der Waals | A | No SSE | 137 | TRP | CE3 | O1 | A | 389 | 3.47 | van der Waals | A | No SSE | 181 | GLU | CD | C3 | A | 389 | 3.57 | van der Waals | A | No SSE | 181 | GLU | CD | O3 | A | 389 | 2.99 | van der Waals | A | No SSE | 181 | GLU | CD | O5 | A | 389 | 3.75 | van der Waals | A | No SSE | 181 | GLU | OE1 | C3 | A | 389 | 3.49 | van der Waals | A | No SSE | 181 | GLU | OE1 | C5 | A | 389 | 3.65 | van der Waals | A | No SSE | 181 | GLU | OE1 | O3 | A | 389 | 2.9 | H.Bond | A | No SSE | 181 | GLU | OE1 | O5 | A | 389 | 2.81 | H.Bond | A | No SSE | 181 | GLU | OE2 | C2 | A | 389 | 3.69 | van der Waals | A | No SSE | 181 | GLU | OE2 | C3 | A | 389 | 3.08 | van der Waals | A | No SSE | 181 | GLU | OE2 | O2 | A | 389 | 3.26 | H.Bond | A | No SSE | 181 | GLU | OE2 | O3 | A | 389 | 2.43 | H.Bond | A | 217-223 H: 1 | 217 | GLU | CD | O5 | A | 389 | 3.87 | van der Waals | A | 217-223 H: 1 | 217 | GLU | OE2 | O5 | A | 389 | 2.89 | H.Bond | A | 217-223 H: 1 | 220 | HIS | CE1 | C5 | A | 389 | 3.93 | van der Waals | A | 217-223 H: 1 | 220 | HIS | CE1 | O5 | A | 389 | 2.92 | van der Waals | A | 217-223 H: 1 | 220 | HIS | NE2 | O5 | A | 389 | 3.23 | H.Bond | A | 245-246 S: 1 | 245 | ASP | CG | O3 | A | 389 | 3.99 | van der Waals | A | 245-246 S: 1 | 245 | ASP | OD1 | O3 | A | 389 | 2.85 | H.Bond | A | No SSE | 287 | ASP | CG | O4 | A | 389 | 3.27 | van der Waals | A | No SSE | 287 | ASP | OD1 | O4 | A | 389 | 3.22 | H.Bond | A | No SSE | 287 | ASP | OD2 | C3 | A | 389 | 3.51 | van der Waals | A | No SSE | 287 | ASP | OD2 | C4 | A | 389 | 3.2 | van der Waals | A | No SSE | 287 | ASP | OD2 | C5 | A | 389 | 3.55 | van der Waals | A | No SSE | 287 | ASP | OD2 | O3 | A | 389 | 3.11 | H.Bond | A | No SSE | 287 | ASP | OD2 | O4 | A | 389 | 2.55 | H.Bond | A | No SSE | 287 | ASP | OD2 | O5 | A | 389 | 3.04 | H.Bond | A | Water | 408 | HOH | O | C2 | A | 389 | 3.69 | van der Waals | A | Water | 408 | HOH | O | C3 | A | 389 | 3.63 | van der Waals | A | Water | 408 | HOH | O | O2 | A | 389 | 3.84 | H.Bond | A | Water | 408 | HOH | O | O3 | A | 389 | 2.66 | H.Bond | A | Water | 409 | HOH | O | C5 | A | 389 | 3.58 | van der Waals | A | Water | 409 | HOH | O | O5 | A | 389 | 2.95 | H.Bond | A | Water | 563 | HOH | O | C5 | A | 389 | 3.08 | van der Waals | A | Water | 563 | HOH | O | O5 | A | 389 | 3.31 | H.Bond | A | Water | 583 | HOH | O | C1 | A | 389 | 3.82 | van der Waals | A | Water | 583 | HOH | O | C2 | A | 389 | 3.99 | van der Waals | A | Water | 583 | HOH | O | O1 | A | 389 | 2.48 | H.Bond | A | Water | 583 | HOH | O | O2 | A | 389 | 3.19 | H.Bond | A | Water | 603 | HOH | O | C4 | A | 389 | 3.81 | van der Waals | A | Water | 603 | HOH | O | O4 | A | 389 | 3.09 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 3XIS | A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCE | X-RAY | 1.60 | 0.151
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLLLLLLHSLL
+5w
> Sequence: WHTFWEKEHDDD
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XLS /(393) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 16 | TRP | NE1 | O3 | A | 393 | 3.56 | H.Bond | A | No SSE | 16 | TRP | CE2 | O3 | A | 393 | 3.92 | van der Waals | A | No SSE | 16 | TRP | CZ2 | O3 | A | 393 | 3.9 | van der Waals | A | No SSE | 54 | HIS | CD2 | O5 | A | 393 | 3.73 | van der Waals | A | No SSE | 54 | HIS | CE1 | C5 | A | 393 | 3.63 | van der Waals | A | No SSE | 54 | HIS | CE1 | O5 | A | 393 | 3.94 | van der Waals | A | No SSE | 54 | HIS | NE2 | C5 | A | 393 | 3.05 | H.Bond | A | No SSE | 54 | HIS | NE2 | O5 | A | 393 | 2.93 | H.Bond | A | No SSE | 90 | THR | OG1 | O5 | A | 393 | 3.93 | H.Bond | A | No SSE | 94 | PHE | CE1 | O5 | A | 393 | 3.89 | van der Waals | A | No SSE | 137 | TRP | CB | C4 | A | 393 | 3.78 | van der Waals | A | No SSE | 137 | TRP | CB | O5 | A | 393 | 3.54 | van der Waals | A | No SSE | 137 | TRP | CD2 | C1 | A | 393 | 3.68 | van der Waals | A | No SSE | 137 | TRP | CD2 | C2 | A | 393 | 3.83 | van der Waals | A | No SSE | 137 | TRP | NE1 | O1 | A | 393 | 3.93 | H.Bond | A | No SSE | 137 | TRP | CE2 | C1 | A | 393 | 3.55 | van der Waals | A | No SSE | 137 | TRP | CE2 | O1 | A | 393 | 3.41 | van der Waals | A | No SSE | 137 | TRP | CE3 | C1 | A | 393 | 3.66 | van der Waals | A | No SSE | 137 | TRP | CE3 | C2 | A | 393 | 3.99 | van der Waals | A | No SSE | 137 | TRP | CE3 | C3 | A | 393 | 3.94 | van der Waals | A | No SSE | 137 | TRP | CE3 | O5 | A | 393 | 3.65 | van der Waals | A | No SSE | 137 | TRP | CZ2 | C1 | A | 393 | 3.55 | van der Waals | A | No SSE | 137 | TRP | CZ2 | O1 | A | 393 | 3.26 | van der Waals | A | No SSE | 137 | TRP | CZ3 | C1 | A | 393 | 3.59 | van der Waals | A | No SSE | 137 | TRP | CH2 | C1 | A | 393 | 3.55 | van der Waals | A | No SSE | 137 | TRP | CH2 | O1 | A | 393 | 3.68 | van der Waals | A | No SSE | 181 | GLU | CD | C4 | A | 393 | 3.65 | van der Waals | A | No SSE | 181 | GLU | CD | O2 | A | 393 | 3.76 | van der Waals | A | No SSE | 181 | GLU | CD | O4 | A | 393 | 3.11 | van der Waals | A | No SSE | 181 | GLU | OE1 | C4 | A | 393 | 3.37 | van der Waals | A | No SSE | 181 | GLU | OE1 | O4 | A | 393 | 2.58 | H.Bond | A | No SSE | 181 | GLU | OE2 | C2 | A | 393 | 3.14 | van der Waals | A | No SSE | 181 | GLU | OE2 | C3 | A | 393 | 3.79 | van der Waals | A | No SSE | 181 | GLU | OE2 | C4 | A | 393 | 3.37 | van der Waals | A | No SSE | 181 | GLU | OE2 | O2 | A | 393 | 2.62 | H.Bond | A | No SSE | 181 | GLU | OE2 | O4 | A | 393 | 2.96 | H.Bond | A | No SSE | 183 | LYS | CD | O1 | A | 393 | 3.61 | van der Waals | A | No SSE | 183 | LYS | CE | O1 | A | 393 | 3.8 | van der Waals | A | No SSE | 183 | LYS | NZ | O1 | A | 393 | 3.24 | H.Bond | A | 216-220 H: 1 | 217 | GLU | CD | O2 | A | 393 | 3.58 | van der Waals | A | 216-220 H: 1 | 217 | GLU | OE1 | O2 | A | 393 | 3.09 | H.Bond | A | 216-220 H: 1 | 217 | GLU | OE2 | O2 | A | 393 | 3.59 | H.Bond | A | 216-220 H: 1 | 220 | HIS | CE1 | C2 | A | 393 | 3.78 | van der Waals | A | 216-220 H: 1 | 220 | HIS | CE1 | O1 | A | 393 | 3.34 | van der Waals | A | 216-220 H: 1 | 220 | HIS | CE1 | O2 | A | 393 | 3.14 | van der Waals | A | 216-220 H: 1 | 220 | HIS | NE2 | O1 | A | 393 | 3.16 | H.Bond | A | 216-220 H: 1 | 220 | HIS | NE2 | O2 | A | 393 | 3.37 | H.Bond | A | 245-246 S: 1 | 245 | ASP | OD2 | O4 | A | 393 | 3.64 | H.Bond | A | No SSE | 255 | ASP | OD2 | O1 | A | 393 | 3.81 | H.Bond | A | No SSE | 287 | ASP | CG | O2 | A | 393 | 3.9 | van der Waals | A | No SSE | 287 | ASP | CG | O3 | A | 393 | 3.25 | van der Waals | A | No SSE | 287 | ASP | OD1 | O3 | A | 393 | 3.38 | H.Bond | A | No SSE | 287 | ASP | OD2 | C2 | A | 393 | 3.62 | van der Waals | A | No SSE | 287 | ASP | OD2 | C3 | A | 393 | 3.64 | van der Waals | A | No SSE | 287 | ASP | OD2 | O2 | A | 393 | 2.67 | H.Bond | A | No SSE | 287 | ASP | OD2 | O3 | A | 393 | 2.58 | H.Bond | A | No SSE | 287 | ASP | OD2 | O4 | A | 393 | 3.63 | H.Bond | A | Water | 448 | HOH | O | C4 | A | 393 | 3.84 | van der Waals | A | Water | 448 | HOH | O | O3 | A | 393 | 3.87 | H.Bond | A | Water | 448 | HOH | O | O4 | A | 393 | 2.51 | H.Bond | A | Water | 479 | HOH | O | C5 | A | 393 | 3.71 | van der Waals | A | Water | 479 | HOH | O | O5 | A | 393 | 2.47 | H.Bond | A | Water | 511 | HOH | O | C1 | A | 393 | 3.75 | van der Waals | A | Water | 511 | HOH | O | C2 | A | 393 | 3.76 | van der Waals | A | Water | 511 | HOH | O | O1 | A | 393 | 3.75 | H.Bond | A | Water | 511 | HOH | O | O2 | A | 393 | 2.97 | H.Bond | A | Water | 637 | HOH | O | C1 | A | 393 | 3.72 | van der Waals | A | Water | 637 | HOH | O | C2 | A | 393 | 3.88 | van der Waals | A | Water | 637 | HOH | O | C3 | A | 393 | 3.87 | van der Waals | A | Water | 637 | HOH | O | O2 | A | 393 | 3.81 | H.Bond | A | Water | 637 | HOH | O | O3 | A | 393 | 3.06 | H.Bond | A | Water | 721 | HOH | O | C1 | A | 393 | 1.69 | van der Waals, Covalent | A | Water | 721 | HOH | O | C2 | A | 393 | 2.82 | van der Waals | A | Water | 721 | HOH | O | O2 | A | 393 | 3.16 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 4XIS | A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCE | X-RAY | 1.60 | 0.135
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLLLLHSLL
+4w
> Sequence: WHWEKEHDDD
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XLS /(393) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 16 | TRP | NE1 | O3 | A | 393 | 3.32 | H.Bond | A | No SSE | 16 | TRP | CE2 | O3 | A | 393 | 3.75 | van der Waals | A | No SSE | 16 | TRP | CZ2 | O3 | A | 393 | 3.82 | van der Waals | A | No SSE | 54 | HIS | CD2 | O5 | A | 393 | 3.7 | van der Waals | A | No SSE | 54 | HIS | CE1 | O5 | A | 393 | 3.84 | van der Waals | A | No SSE | 54 | HIS | NE2 | C5 | A | 393 | 3.41 | H.Bond | A | No SSE | 54 | HIS | NE2 | O5 | A | 393 | 2.87 | H.Bond | A | No SSE | 137 | TRP | CB | C4 | A | 393 | 3.86 | van der Waals | A | No SSE | 137 | TRP | CB | O5 | A | 393 | 3.63 | van der Waals | A | No SSE | 137 | TRP | CD2 | C1 | A | 393 | 3.87 | van der Waals | A | No SSE | 137 | TRP | CD2 | C2 | A | 393 | 3.94 | van der Waals | A | No SSE | 137 | TRP | CE2 | C1 | A | 393 | 3.75 | van der Waals | A | No SSE | 137 | TRP | CE2 | O1 | A | 393 | 3.98 | van der Waals | A | No SSE | 137 | TRP | CE3 | C1 | A | 393 | 3.84 | van der Waals | A | No SSE | 137 | TRP | CE3 | O5 | A | 393 | 3.84 | van der Waals | A | No SSE | 137 | TRP | CZ2 | C1 | A | 393 | 3.58 | van der Waals | A | No SSE | 137 | TRP | CZ2 | O1 | A | 393 | 3.62 | van der Waals | A | No SSE | 137 | TRP | CZ3 | C1 | A | 393 | 3.67 | van der Waals | A | No SSE | 137 | TRP | CH2 | C1 | A | 393 | 3.5 | van der Waals | A | No SSE | 137 | TRP | CH2 | O1 | A | 393 | 3.89 | van der Waals | A | No SSE | 181 | GLU | CD | C4 | A | 393 | 3.74 | van der Waals | A | No SSE | 181 | GLU | CD | O2 | A | 393 | 3.76 | van der Waals | A | No SSE | 181 | GLU | CD | O4 | A | 393 | 3.11 | van der Waals | A | No SSE | 181 | GLU | OE1 | C4 | A | 393 | 3.27 | van der Waals | A | No SSE | 181 | GLU | OE1 | O4 | A | 393 | 2.58 | H.Bond | A | No SSE | 181 | GLU | OE2 | C4 | A | 393 | 3.73 | van der Waals | A | No SSE | 181 | GLU | OE2 | O2 | A | 393 | 2.9 | H.Bond | A | No SSE | 181 | GLU | OE2 | O4 | A | 393 | 3.03 | H.Bond | A | No SSE | 183 | LYS | CD | O1 | A | 393 | 3.9 | van der Waals | A | No SSE | 183 | LYS | CE | O1 | A | 393 | 3.84 | van der Waals | A | No SSE | 183 | LYS | NZ | O1 | A | 393 | 3.07 | H.Bond | A | 216-220 H: 1 | 217 | GLU | OE1 | O2 | A | 393 | 3.08 | H.Bond | A | 216-220 H: 1 | 220 | HIS | CE1 | O1 | A | 393 | 3.61 | van der Waals | A | 216-220 H: 1 | 220 | HIS | CE1 | O2 | A | 393 | 3.22 | van der Waals | A | 216-220 H: 1 | 220 | HIS | NE2 | O1 | A | 393 | 3.47 | H.Bond | A | 216-220 H: 1 | 220 | HIS | NE2 | O2 | A | 393 | 3.74 | H.Bond | A | 245-246 S: 1 | 245 | ASP | OD2 | O4 | A | 393 | 3.22 | H.Bond | A | No SSE | 255 | ASP | OD2 | O1 | A | 393 | 3.17 | H.Bond | A | No SSE | 287 | ASP | CG | O3 | A | 393 | 3.54 | van der Waals | A | No SSE | 287 | ASP | OD1 | O3 | A | 393 | 3.54 | H.Bond | A | No SSE | 287 | ASP | OD2 | C2 | A | 393 | 3.63 | van der Waals | A | No SSE | 287 | ASP | OD2 | C3 | A | 393 | 3.65 | van der Waals | A | No SSE | 287 | ASP | OD2 | C4 | A | 393 | 3.99 | van der Waals | A | No SSE | 287 | ASP | OD2 | O2 | A | 393 | 3.01 | H.Bond | A | No SSE | 287 | ASP | OD2 | O3 | A | 393 | 2.89 | H.Bond | A | No SSE | 287 | ASP | OD2 | O4 | A | 393 | 3.18 | H.Bond | A | Water | 479 | HOH | O | C5 | A | 393 | 3.81 | van der Waals | A | Water | 479 | HOH | O | O5 | A | 393 | 2.65 | H.Bond | A | Water | 737 | HOH | O | C1 | A | 393 | 3.44 | van der Waals | A | Water | 737 | HOH | O | C2 | A | 393 | 3.32 | van der Waals | A | Water | 737 | HOH | O | O1 | A | 393 | 3.16 | H.Bond | A | Water | 737 | HOH | O | O2 | A | 393 | 3 | H.Bond | A | Water | 737 | HOH | O | O3 | A | 393 | 3.95 | H.Bond | A | Water | 738 | HOH | O | C5 | A | 393 | 3.94 | van der Waals | A | Water | 738 | HOH | O | O4 | A | 393 | 2.97 | H.Bond | A | Water | 774 | HOH | O | C1 | A | 393 | 3.74 | van der Waals | A | Water | 774 | HOH | O | C3 | A | 393 | 3.99 | van der Waals | A | Water | 774 | HOH | O | O3 | A | 393 | 3.23 | H.Bond | |