There are 7 GlcSFMs: |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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2 | 4GNA | mouse SMP30/GNL-xylitol complex | X-RAY | 1.85 | 0.167
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: SLSLLLSSS
+4w
> Sequence: EIRNEPANDY
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XYL /(302) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 17-23 S: 0 | 18 | GLU | CD | O5 | A | 302 | 3.51 | van der Waals | A | 17-23 S: 0 | 18 | GLU | OE2 | C5 | A | 302 | 3.66 | van der Waals | A | 17-23 S: 0 | 18 | GLU | OE2 | O5 | A | 302 | 2.62 | H.Bond | A | No SSE | 34 | ILE | CD1 | O4 | A | 302 | 3.72 | van der Waals | A | 100-107 S: 0 | 101 | ARG | CZ | O4 | A | 302 | 3.87 | van der Waals | A | 100-107 S: 0 | 101 | ARG | NH1 | O4 | A | 302 | 3.83 | H.Bond | A | 100-107 S: 0 | 101 | ARG | NH2 | O3 | A | 302 | 3.48 | H.Bond | A | 100-107 S: 0 | 101 | ARG | NH2 | O4 | A | 302 | 3 | H.Bond | A | 100-107 S: 0 | 103 | ASN | CG | C5 | A | 302 | 3.84 | van der Waals | A | 100-107 S: 0 | 103 | ASN | CG | O4 | A | 302 | 3.55 | van der Waals | A | 100-107 S: 0 | 103 | ASN | CG | O5 | A | 302 | 3.51 | van der Waals | A | 100-107 S: 0 | 103 | ASN | OD1 | C4 | A | 302 | 3.81 | van der Waals | A | 100-107 S: 0 | 103 | ASN | OD1 | C5 | A | 302 | 3.69 | van der Waals | A | 100-107 S: 0 | 103 | ASN | OD1 | O4 | A | 302 | 2.77 | H.Bond | A | 100-107 S: 0 | 103 | ASN | OD1 | O5 | A | 302 | 3.24 | H.Bond | A | 100-107 S: 0 | 103 | ASN | ND2 | C5 | A | 302 | 3.16 | H.Bond | A | 100-107 S: 0 | 103 | ASN | ND2 | O4 | A | 302 | 3.71 | H.Bond | A | 100-107 S: 0 | 103 | ASN | ND2 | O5 | A | 302 | 2.98 | H.Bond | A | No SSE | 121 | GLU | CD | O2 | A | 302 | 3.56 | van der Waals | A | No SSE | 121 | GLU | CD | O3 | A | 302 | 3.56 | van der Waals | A | No SSE | 121 | GLU | OE1 | C3 | A | 302 | 3.85 | van der Waals | A | No SSE | 121 | GLU | OE1 | O2 | A | 302 | 3.5 | H.Bond | A | No SSE | 121 | GLU | OE1 | O3 | A | 302 | 2.82 | H.Bond | A | No SSE | 121 | GLU | OE2 | C2 | A | 302 | 3.87 | van der Waals | A | No SSE | 121 | GLU | OE2 | C3 | A | 302 | 3.9 | van der Waals | A | No SSE | 121 | GLU | OE2 | O2 | A | 302 | 2.84 | H.Bond | A | No SSE | 121 | GLU | OE2 | O3 | A | 302 | 3.64 | H.Bond | A | No SSE | 124 | PRO | CA | O2 | A | 302 | 3.87 | van der Waals | A | No SSE | 125 | ALA | N | O2 | A | 302 | 3.76 | H.Bond | A | 153-158 S: 0 | 154 | ASN | CG | O5 | A | 302 | 3.8 | van der Waals | A | 153-158 S: 0 | 154 | ASN | OD1 | C5 | A | 302 | 3.99 | van der Waals | A | 153-158 S: 0 | 154 | ASN | OD1 | O5 | A | 302 | 3.37 | H.Bond | A | 153-158 S: 0 | 154 | ASN | ND2 | C5 | A | 302 | 3.19 | H.Bond | A | 153-158 S: 0 | 154 | ASN | ND2 | O5 | A | 302 | 3.43 | H.Bond | A | 202-208 S: 0 | 204 | ASP | CG | O5 | A | 302 | 3.98 | van der Waals | A | 202-208 S: 0 | 204 | ASP | OD1 | C1 | A | 302 | 3.98 | van der Waals | A | 202-208 S: 0 | 204 | ASP | OD1 | C5 | A | 302 | 3.83 | van der Waals | A | 202-208 S: 0 | 204 | ASP | OD1 | O5 | A | 302 | 3.97 | H.Bond | A | 202-208 S: 0 | 204 | ASP | OD2 | C5 | A | 302 | 3.53 | van der Waals | A | 202-208 S: 0 | 204 | ASP | OD2 | O5 | A | 302 | 3.2 | H.Bond | A | 214-219 S: -1 | 219 | TYR | CB | O1 | A | 302 | 3.92 | van der Waals | A | 214-219 S: -1 | 219 | TYR | CG | O1 | A | 302 | 3.36 | van der Waals | A | 214-219 S: -1 | 219 | TYR | CD1 | O1 | A | 302 | 3.86 | van der Waals | A | 214-219 S: -1 | 219 | TYR | CD2 | O1 | A | 302 | 3.13 | van der Waals | A | 214-219 S: -1 | 219 | TYR | CE2 | O1 | A | 302 | 3.46 | van der Waals | A | 214-219 S: -1 | 219 | TYR | CZ | O1 | A | 302 | 3.95 | van der Waals | A | Water | 530 | HOH | O | O3 | A | 302 | 3.63 | H.Bond | A | Water | 544 | HOH | O | O3 | A | 302 | 3.71 | H.Bond | A | Water | 591 | HOH | O | O5 | A | 302 | 3.96 | H.Bond | A | Water | 592 | HOH | O | C5 | A | 302 | 3.98 | van der Waals | A | Water | 592 | HOH | O | O5 | A | 302 | 2.68 | H.Bond | |
| 2 / B |
> Structure: SHLS
+2w
> Sequence: YKEGKR
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XYL /(301) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | 187-195 S: -1 | 194 | TYR | CA | O1 | B | 301 | 3.93 | van der Waals | B | 187-195 S: -1 | 194 | TYR | C | O1 | B | 301 | 3.91 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CG | C1 | B | 301 | 3.99 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CD1 | C1 | B | 301 | 3.45 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CE1 | C1 | B | 301 | 3.39 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CE1 | C3 | B | 301 | 3.87 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CE1 | C4 | B | 301 | 3.7 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CZ | C1 | B | 301 | 3.9 | van der Waals | B | 187-195 S: -1 | 194 | TYR | CZ | C3 | B | 301 | 3.98 | van der Waals | B | 187-195 S: -1 | 194 | TYR | OH | C3 | B | 301 | 3.78 | van der Waals | B | 187-195 S: -1 | 194 | TYR | OH | C5 | B | 301 | 3.87 | van der Waals | B | 187-195 S: -1 | 195 | LYS | N | C1 | B | 301 | 3.68 | H.Bond | B | 187-195 S: -1 | 195 | LYS | N | O1 | B | 301 | 2.96 | H.Bond | B | 187-195 S: -1 | 195 | LYS | CA | O1 | B | 301 | 3.73 | van der Waals | B | 187-195 S: -1 | 195 | LYS | C | O2 | B | 301 | 3.82 | van der Waals | B | 187-195 S: -1 | 195 | LYS | O | C1 | B | 301 | 3.31 | van der Waals | B | 187-195 S: -1 | 195 | LYS | O | C2 | B | 301 | 3.53 | van der Waals | B | 187-195 S: -1 | 195 | LYS | O | O1 | B | 301 | 3.47 | H.Bond | B | 187-195 S: -1 | 195 | LYS | O | O2 | B | 301 | 2.74 | H.Bond | B | 187-195 S: -1 | 195 | LYS | CB | O1 | B | 301 | 3.68 | van der Waals | B | 197-201 H: 5 | 197 | GLU | CG | C3 | B | 301 | 3.79 | van der Waals | B | 197-201 H: 5 | 197 | GLU | CG | O3 | B | 301 | 3.23 | van der Waals | B | 197-201 H: 5 | 197 | GLU | CD | O3 | B | 301 | 3.25 | van der Waals | B | 197-201 H: 5 | 197 | GLU | OE2 | C3 | B | 301 | 3.4 | van der Waals | B | 197-201 H: 5 | 197 | GLU | OE2 | C5 | B | 301 | 3.41 | van der Waals | B | 197-201 H: 5 | 197 | GLU | OE2 | O3 | B | 301 | 2.52 | H.Bond | B | No SSE | 232 | GLY | O | C1 | B | 301 | 3.76 | van der Waals | B | 233-239 S: -1 | 233 | LYS | CA | O5 | B | 301 | 3.77 | van der Waals | B | 233-239 S: -1 | 233 | LYS | C | O5 | B | 301 | 3.84 | van der Waals | B | 233-239 S: -1 | 233 | LYS | CE | O4 | B | 301 | 3.48 | van der Waals | B | 233-239 S: -1 | 233 | LYS | CE | O5 | B | 301 | 3.7 | van der Waals | B | 233-239 S: -1 | 233 | LYS | NZ | O4 | B | 301 | 3.43 | H.Bond | B | 233-239 S: -1 | 233 | LYS | NZ | O5 | B | 301 | 3.79 | H.Bond | B | 233-239 S: -1 | 234 | ARG | N | C5 | B | 301 | 3.8 | H.Bond | B | 233-239 S: -1 | 234 | ARG | N | O5 | B | 301 | 2.96 | H.Bond | B | 233-239 S: -1 | 234 | ARG | CA | O5 | B | 301 | 3.85 | van der Waals | B | 233-239 S: -1 | 234 | ARG | CB | C5 | B | 301 | 3.95 | van der Waals | B | 233-239 S: -1 | 234 | ARG | CB | O5 | B | 301 | 3.69 | van der Waals | B | 233-239 S: -1 | 234 | ARG | NH1 | C5 | B | 301 | 3.62 | H.Bond | B | Water | 577 | HOH | O | C1 | B | 301 | 3.18 | van der Waals | B | Water | 577 | HOH | O | C2 | B | 301 | 3.99 | van der Waals | B | Water | 577 | HOH | O | O1 | B | 301 | 2.82 | H.Bond | B | Water | 585 | HOH | O | C2 | B | 301 | 3.94 | van der Waals | B | Water | 585 | HOH | O | C4 | B | 301 | 3.73 | van der Waals | B | Water | 585 | HOH | O | O4 | B | 301 | 2.59 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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2 | 1XLM | D254E, D256E MUTANT OF D-XYLOSE ISOMERASE COMPLEXED WITH AL3 AND XYLITOL | X-RAY | 2.40 | 0.179
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: HSLLLSHSLLL
> Sequence: WHWEKEHDEED
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XYL /(400) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 14-17 H: 1 | 15 | TRP | NE1 | O3 | A | 400 | 3.68 | H.Bond | A | 14-17 H: 1 | 15 | TRP | CZ2 | O4 | A | 400 | 3.66 | van der Waals | A | 49-53 S: 1 | 53 | HIS | CD2 | O5 | A | 400 | 3.66 | van der Waals | A | 49-53 S: 1 | 53 | HIS | CE1 | C5 | A | 400 | 3.88 | van der Waals | A | 49-53 S: 1 | 53 | HIS | CE1 | O5 | A | 400 | 3.81 | van der Waals | A | 49-53 S: 1 | 53 | HIS | NE2 | C5 | A | 400 | 3.32 | H.Bond | A | 49-53 S: 1 | 53 | HIS | NE2 | O5 | A | 400 | 2.85 | H.Bond | A | No SSE | 136 | TRP | CB | C4 | A | 400 | 3.89 | van der Waals | A | No SSE | 136 | TRP | CB | C5 | A | 400 | 3.72 | van der Waals | A | No SSE | 136 | TRP | CB | O5 | A | 400 | 3.25 | van der Waals | A | No SSE | 136 | TRP | CG | C2 | A | 400 | 3.63 | van der Waals | A | No SSE | 136 | TRP | CD2 | C1 | A | 400 | 3.82 | van der Waals | A | No SSE | 136 | TRP | CD2 | C2 | A | 400 | 3.33 | van der Waals | A | No SSE | 136 | TRP | CD2 | C3 | A | 400 | 3.81 | van der Waals | A | No SSE | 136 | TRP | NE1 | C2 | A | 400 | 3.96 | H.Bond | A | No SSE | 136 | TRP | CE2 | C1 | A | 400 | 3.68 | van der Waals | A | No SSE | 136 | TRP | CE2 | C2 | A | 400 | 3.59 | van der Waals | A | No SSE | 136 | TRP | CE2 | O1 | A | 400 | 3.73 | van der Waals | A | No SSE | 136 | TRP | CE3 | C1 | A | 400 | 3.89 | van der Waals | A | No SSE | 136 | TRP | CE3 | C2 | A | 400 | 3.62 | van der Waals | A | No SSE | 136 | TRP | CE3 | C3 | A | 400 | 3.65 | van der Waals | A | No SSE | 136 | TRP | CE3 | O5 | A | 400 | 3.76 | van der Waals | A | No SSE | 136 | TRP | CZ2 | C1 | A | 400 | 3.66 | van der Waals | A | No SSE | 136 | TRP | CZ2 | O1 | A | 400 | 3.64 | van der Waals | A | No SSE | 136 | TRP | CZ3 | C1 | A | 400 | 3.82 | van der Waals | A | No SSE | 136 | TRP | CH2 | C1 | A | 400 | 3.71 | van der Waals | A | No SSE | 180 | GLU | CD | C2 | A | 400 | 3.7 | van der Waals | A | No SSE | 180 | GLU | CD | C3 | A | 400 | 3.93 | van der Waals | A | No SSE | 180 | GLU | CD | C4 | A | 400 | 2.98 | van der Waals | A | No SSE | 180 | GLU | CD | C5 | A | 400 | 3.81 | van der Waals | A | No SSE | 180 | GLU | CD | O2 | A | 400 | 3.12 | van der Waals | A | No SSE | 180 | GLU | CD | O4 | A | 400 | 3.26 | van der Waals | A | No SSE | 180 | GLU | OE1 | C3 | A | 400 | 3.8 | van der Waals | A | No SSE | 180 | GLU | OE1 | C4 | A | 400 | 2.48 | van der Waals | A | No SSE | 180 | GLU | OE1 | C5 | A | 400 | 2.86 | van der Waals | A | No SSE | 180 | GLU | OE1 | O2 | A | 400 | 3.8 | H.Bond | A | No SSE | 180 | GLU | OE1 | O4 | A | 400 | 2.81 | H.Bond | A | No SSE | 180 | GLU | OE1 | O5 | A | 400 | 3.82 | H.Bond | A | No SSE | 180 | GLU | OE2 | C2 | A | 400 | 3.13 | van der Waals | A | No SSE | 180 | GLU | OE2 | C3 | A | 400 | 3.55 | van der Waals | A | No SSE | 180 | GLU | OE2 | C4 | A | 400 | 2.9 | van der Waals | A | No SSE | 180 | GLU | OE2 | O2 | A | 400 | 2.16 | H.Bond | A | No SSE | 180 | GLU | OE2 | O4 | A | 400 | 2.88 | H.Bond | A | No SSE | 182 | LYS | NZ | O1 | A | 400 | 3.68 | H.Bond | A | 211-216 S: 1 | 216 | GLU | OE1 | O2 | A | 400 | 3.25 | H.Bond | A | 211-216 S: 1 | 216 | GLU | OE2 | O2 | A | 400 | 3.95 | H.Bond | A | 217-223 H: 1 | 219 | HIS | CE1 | C2 | A | 400 | 3.95 | van der Waals | A | 217-223 H: 1 | 219 | HIS | CE1 | O1 | A | 400 | 3.52 | van der Waals | A | 217-223 H: 1 | 219 | HIS | CE1 | O2 | A | 400 | 3.2 | van der Waals | A | 217-223 H: 1 | 219 | HIS | NE2 | O1 | A | 400 | 3.08 | H.Bond | A | 217-223 H: 1 | 219 | HIS | NE2 | O2 | A | 400 | 3.34 | H.Bond | A | 240-244 S: 1 | 244 | ASP | OD2 | O4 | A | 400 | 3.45 | H.Bond | A | No SSE | 254 | GLU | CD | O1 | A | 400 | 3.29 | van der Waals | A | No SSE | 254 | GLU | OE1 | C1 | A | 400 | 3.68 | van der Waals | A | No SSE | 254 | GLU | OE1 | O1 | A | 400 | 2.88 | H.Bond | A | No SSE | 254 | GLU | OE2 | C1 | A | 400 | 3.91 | van der Waals | A | No SSE | 254 | GLU | OE2 | O1 | A | 400 | 2.92 | H.Bond | A | No SSE | 256 | GLU | OE2 | C1 | A | 400 | 3.7 | van der Waals | A | No SSE | 256 | GLU | OE2 | O1 | A | 400 | 3.59 | H.Bond | A | No SSE | 292 | ASP | CG | O4 | A | 400 | 3.69 | van der Waals | A | No SSE | 292 | ASP | OD1 | O4 | A | 400 | 3.97 | H.Bond | A | No SSE | 292 | ASP | OD2 | O2 | A | 400 | 3.13 | H.Bond | A | No SSE | 292 | ASP | OD2 | O3 | A | 400 | 3.77 | H.Bond | A | No SSE | 292 | ASP | OD2 | O4 | A | 400 | 3.12 | H.Bond | |
| 2 / B |
> Structure: HSSLLLSHSLLL
> Sequence: WHTWEKEHDEED
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XYL /(400) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | 14-17 H: 1 | 15 | TRP | NE1 | O3 | B | 400 | 3.49 | H.Bond | B | 14-17 H: 1 | 15 | TRP | CZ2 | O4 | B | 400 | 3.74 | van der Waals | B | 49-53 S: 1 | 53 | HIS | CD2 | O5 | B | 400 | 3.41 | van der Waals | B | 49-53 S: 1 | 53 | HIS | CE1 | O5 | B | 400 | 3.53 | van der Waals | B | 49-53 S: 1 | 53 | HIS | NE2 | C4 | B | 400 | 3.87 | H.Bond | B | 49-53 S: 1 | 53 | HIS | NE2 | C5 | B | 400 | 3.66 | H.Bond | B | 49-53 S: 1 | 53 | HIS | NE2 | O5 | B | 400 | 2.61 | H.Bond | B | 87-89 S: 1 | 89 | THR | OG1 | O5 | B | 400 | 3.86 | H.Bond | B | No SSE | 136 | TRP | CB | C5 | B | 400 | 3.27 | van der Waals | B | No SSE | 136 | TRP | CB | O5 | B | 400 | 3.7 | van der Waals | B | No SSE | 136 | TRP | CG | C2 | B | 400 | 3.94 | van der Waals | B | No SSE | 136 | TRP | CG | C5 | B | 400 | 3.77 | van der Waals | B | No SSE | 136 | TRP | CD2 | C1 | B | 400 | 3.94 | van der Waals | B | No SSE | 136 | TRP | CD2 | C2 | B | 400 | 3.58 | van der Waals | B | No SSE | 136 | TRP | CD2 | C5 | B | 400 | 3.92 | van der Waals | B | No SSE | 136 | TRP | CE2 | C1 | B | 400 | 3.81 | van der Waals | B | No SSE | 136 | TRP | CE2 | C2 | B | 400 | 3.88 | van der Waals | B | No SSE | 136 | TRP | CE2 | O1 | B | 400 | 3.9 | van der Waals | B | No SSE | 136 | TRP | CE3 | C1 | B | 400 | 3.97 | van der Waals | B | No SSE | 136 | TRP | CE3 | C2 | B | 400 | 3.75 | van der Waals | B | No SSE | 136 | TRP | CE3 | C5 | B | 400 | 3.74 | van der Waals | B | No SSE | 136 | TRP | CE3 | O5 | B | 400 | 3.98 | van der Waals | B | No SSE | 136 | TRP | CZ2 | C1 | B | 400 | 3.74 | van der Waals | B | No SSE | 136 | TRP | CZ2 | O1 | B | 400 | 3.81 | van der Waals | B | No SSE | 136 | TRP | CZ3 | C1 | B | 400 | 3.87 | van der Waals | B | No SSE | 136 | TRP | CH2 | C1 | B | 400 | 3.75 | van der Waals | B | No SSE | 180 | GLU | CD | O2 | B | 400 | 3.47 | van der Waals | B | No SSE | 180 | GLU | CD | O4 | B | 400 | 3.91 | van der Waals | B | No SSE | 180 | GLU | OE1 | C4 | B | 400 | 3.89 | van der Waals | B | No SSE | 180 | GLU | OE1 | C5 | B | 400 | 3.54 | van der Waals | B | No SSE | 180 | GLU | OE1 | O2 | B | 400 | 3.84 | H.Bond | B | No SSE | 180 | GLU | OE1 | O4 | B | 400 | 3.18 | H.Bond | B | No SSE | 180 | GLU | OE2 | C2 | B | 400 | 3.76 | van der Waals | B | No SSE | 180 | GLU | OE2 | O2 | B | 400 | 2.61 | H.Bond | B | No SSE | 180 | GLU | OE2 | O4 | B | 400 | 3.76 | H.Bond | B | No SSE | 182 | LYS | NZ | O1 | B | 400 | 3.86 | H.Bond | B | 211-216 S: 1 | 216 | GLU | CD | O2 | B | 400 | 3.78 | van der Waals | B | 211-216 S: 1 | 216 | GLU | OE1 | O2 | B | 400 | 3.01 | H.Bond | B | 211-216 S: 1 | 216 | GLU | OE2 | O1 | B | 400 | 3.99 | H.Bond | B | 211-216 S: 1 | 216 | GLU | OE2 | O2 | B | 400 | 3.8 | H.Bond | B | 217-223 H: 1 | 219 | HIS | CE1 | O1 | B | 400 | 3.39 | van der Waals | B | 217-223 H: 1 | 219 | HIS | CE1 | O2 | B | 400 | 3.07 | van der Waals | B | 217-223 H: 1 | 219 | HIS | NE2 | O1 | B | 400 | 2.94 | H.Bond | B | 217-223 H: 1 | 219 | HIS | NE2 | O2 | B | 400 | 3.26 | H.Bond | B | 240-244 S: 1 | 244 | ASP | OD2 | O4 | B | 400 | 3.28 | H.Bond | B | No SSE | 254 | GLU | CD | O1 | B | 400 | 3.41 | van der Waals | B | No SSE | 254 | GLU | OE1 | C1 | B | 400 | 3.92 | van der Waals | B | No SSE | 254 | GLU | OE1 | O1 | B | 400 | 3.05 | H.Bond | B | No SSE | 254 | GLU | OE2 | O1 | B | 400 | 2.92 | H.Bond | B | No SSE | 256 | GLU | OE2 | C1 | B | 400 | 3.59 | van der Waals | B | No SSE | 256 | GLU | OE2 | O1 | B | 400 | 3.43 | H.Bond | B | No SSE | 292 | ASP | CG | C3 | B | 400 | 3.98 | van der Waals | B | No SSE | 292 | ASP | CG | O4 | B | 400 | 3.94 | van der Waals | B | No SSE | 292 | ASP | OD2 | C2 | B | 400 | 3.78 | van der Waals | B | No SSE | 292 | ASP | OD2 | C3 | B | 400 | 3.18 | van der Waals | B | No SSE | 292 | ASP | OD2 | C4 | B | 400 | 3.84 | van der Waals | B | No SSE | 292 | ASP | OD2 | O2 | B | 400 | 3.22 | H.Bond | B | No SSE | 292 | ASP | OD2 | O3 | B | 400 | 3.89 | H.Bond | B | No SSE | 292 | ASP | OD2 | O4 | B | 400 | 3.4 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 2XIS | A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCE | X-RAY | 1.71 | 0.149
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLLLLLHSLL
+4w
> Sequence: WHFWEKEHDDD
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XYL /(390) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 16 | TRP | NE1 | O3 | A | 390 | 3.51 | H.Bond | A | No SSE | 54 | HIS | CD2 | O5 | A | 390 | 3.68 | van der Waals | A | No SSE | 54 | HIS | CE1 | C5 | A | 390 | 3.76 | van der Waals | A | No SSE | 54 | HIS | CE1 | O5 | A | 390 | 3.72 | van der Waals | A | No SSE | 54 | HIS | NE2 | C5 | A | 390 | 3.21 | H.Bond | A | No SSE | 54 | HIS | NE2 | O5 | A | 390 | 2.77 | H.Bond | A | No SSE | 94 | PHE | CE2 | O5 | A | 390 | 3.77 | van der Waals | A | No SSE | 137 | TRP | CB | C4 | A | 390 | 3.85 | van der Waals | A | No SSE | 137 | TRP | CB | O5 | A | 390 | 3.74 | van der Waals | A | No SSE | 137 | TRP | CD2 | C2 | A | 390 | 3.79 | van der Waals | A | No SSE | 137 | TRP | CD2 | C3 | A | 390 | 3.98 | van der Waals | A | No SSE | 137 | TRP | CE2 | C2 | A | 390 | 3.99 | van der Waals | A | No SSE | 137 | TRP | CE2 | O1 | A | 390 | 3.84 | van der Waals | A | No SSE | 137 | TRP | CE3 | C2 | A | 390 | 3.95 | van der Waals | A | No SSE | 137 | TRP | CE3 | C3 | A | 390 | 3.71 | van der Waals | A | No SSE | 137 | TRP | CE3 | O5 | A | 390 | 3.5 | van der Waals | A | No SSE | 137 | TRP | CZ2 | C1 | A | 390 | 3.87 | van der Waals | A | No SSE | 137 | TRP | CZ2 | O1 | A | 390 | 3.54 | van der Waals | A | No SSE | 137 | TRP | CZ3 | C1 | A | 390 | 3.99 | van der Waals | A | No SSE | 137 | TRP | CH2 | C1 | A | 390 | 3.9 | van der Waals | A | No SSE | 137 | TRP | CH2 | O1 | A | 390 | 3.96 | van der Waals | A | No SSE | 181 | GLU | CD | C4 | A | 390 | 3.76 | van der Waals | A | No SSE | 181 | GLU | CD | O2 | A | 390 | 3.91 | van der Waals | A | No SSE | 181 | GLU | CD | O4 | A | 390 | 3.04 | van der Waals | A | No SSE | 181 | GLU | OE1 | C4 | A | 390 | 3.23 | van der Waals | A | No SSE | 181 | GLU | OE1 | O4 | A | 390 | 2.45 | H.Bond | A | No SSE | 181 | GLU | OE2 | C2 | A | 390 | 3.49 | van der Waals | A | No SSE | 181 | GLU | OE2 | C4 | A | 390 | 3.63 | van der Waals | A | No SSE | 181 | GLU | OE2 | O2 | A | 390 | 2.87 | H.Bond | A | No SSE | 181 | GLU | OE2 | O4 | A | 390 | 2.81 | H.Bond | A | No SSE | 183 | LYS | CD | O1 | A | 390 | 3.75 | van der Waals | A | No SSE | 183 | LYS | CE | O1 | A | 390 | 3.64 | van der Waals | A | No SSE | 183 | LYS | NZ | O1 | A | 390 | 3.02 | H.Bond | A | 216-220 H: 1 | 217 | GLU | CD | O2 | A | 390 | 3.62 | van der Waals | A | 216-220 H: 1 | 217 | GLU | OE1 | O2 | A | 390 | 2.99 | H.Bond | A | 216-220 H: 1 | 217 | GLU | OE2 | O2 | A | 390 | 3.52 | H.Bond | A | 216-220 H: 1 | 220 | HIS | CE1 | C2 | A | 390 | 3.73 | van der Waals | A | 216-220 H: 1 | 220 | HIS | CE1 | O1 | A | 390 | 3.45 | van der Waals | A | 216-220 H: 1 | 220 | HIS | CE1 | O2 | A | 390 | 3.28 | van der Waals | A | 216-220 H: 1 | 220 | HIS | NE2 | O1 | A | 390 | 3.11 | H.Bond | A | 216-220 H: 1 | 220 | HIS | NE2 | O2 | A | 390 | 3.46 | H.Bond | A | 245-246 S: 1 | 245 | ASP | OD2 | O4 | A | 390 | 3.35 | H.Bond | A | No SSE | 255 | ASP | OD2 | O1 | A | 390 | 3.79 | H.Bond | A | No SSE | 287 | ASP | CG | O2 | A | 390 | 3.86 | van der Waals | A | No SSE | 287 | ASP | CG | O3 | A | 390 | 3.61 | van der Waals | A | No SSE | 287 | ASP | OD1 | O3 | A | 390 | 3.64 | H.Bond | A | No SSE | 287 | ASP | OD2 | C2 | A | 390 | 3.84 | van der Waals | A | No SSE | 287 | ASP | OD2 | C3 | A | 390 | 3.66 | van der Waals | A | No SSE | 287 | ASP | OD2 | C4 | A | 390 | 3.85 | van der Waals | A | No SSE | 287 | ASP | OD2 | O2 | A | 390 | 2.88 | H.Bond | A | No SSE | 287 | ASP | OD2 | O3 | A | 390 | 2.81 | H.Bond | A | No SSE | 287 | ASP | OD2 | O4 | A | 390 | 3.04 | H.Bond | A | Water | 448 | HOH | O | O4 | A | 390 | 2.95 | H.Bond | A | Water | 479 | HOH | O | C5 | A | 390 | 3.62 | van der Waals | A | Water | 479 | HOH | O | O5 | A | 390 | 2.65 | H.Bond | A | Water | 511 | HOH | O | C1 | A | 390 | 3.47 | van der Waals | A | Water | 511 | HOH | O | C2 | A | 390 | 3.8 | van der Waals | A | Water | 511 | HOH | O | O1 | A | 390 | 3.79 | H.Bond | A | Water | 511 | HOH | O | O2 | A | 390 | 2.94 | H.Bond | A | Water | 511 | HOH | O | O3 | A | 390 | 3.83 | H.Bond | A | Water | 642 | HOH | O | C1 | A | 390 | 3.82 | van der Waals | A | Water | 642 | HOH | O | O3 | A | 390 | 3.1 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
---|
1 | 1XIG | MODES OF BINDING SUBSTRATES AND THEIR ANALOGUES TO THE ENZYME D-XYLOSE ISOMERASE | X-RAY | 1.70 | 0.162
|
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: HSLLLLHSLL
+4w
> Sequence: WHFWEKEHDDD
|
XYL /(389) |
[+] |
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> Graphics rep1:
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> Graphics rep2:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 15-19 H: 1 | 16 | TRP | NE1 | O3 | A | 389 | 3.52 | H.Bond | A | 50-54 S: 1 | 54 | HIS | CD2 | O5 | A | 389 | 3.71 | van der Waals | A | 50-54 S: 1 | 54 | HIS | CE1 | O5 | A | 389 | 3.71 | van der Waals | A | 50-54 S: 1 | 54 | HIS | NE2 | C5 | A | 389 | 3.49 | H.Bond | A | 50-54 S: 1 | 54 | HIS | NE2 | O5 | A | 389 | 2.78 | H.Bond | A | No SSE | 94 | PHE | CE2 | O5 | A | 389 | 3.69 | van der Waals | A | No SSE | 137 | TRP | CB | C4 | A | 389 | 3.7 | van der Waals | A | No SSE | 137 | TRP | CB | C5 | A | 389 | 3.92 | van der Waals | A | No SSE | 137 | TRP | CB | O5 | A | 389 | 3.73 | van der Waals | A | No SSE | 137 | TRP | CG | C4 | A | 389 | 3.95 | van der Waals | A | No SSE | 137 | TRP | CD2 | C2 | A | 389 | 3.62 | van der Waals | A | No SSE | 137 | TRP | CD2 | C3 | A | 389 | 3.95 | van der Waals | A | No SSE | 137 | TRP | CE2 | C1 | A | 389 | 3.87 | van der Waals | A | No SSE | 137 | TRP | CE2 | C2 | A | 389 | 3.82 | van der Waals | A | No SSE | 137 | TRP | CE2 | O1 | A | 389 | 3.9 | van der Waals | A | No SSE | 137 | TRP | CE3 | C1 | A | 389 | 3.88 | van der Waals | A | No SSE | 137 | TRP | CE3 | C2 | A | 389 | 3.74 | van der Waals | A | No SSE | 137 | TRP | CE3 | C3 | A | 389 | 3.68 | van der Waals | A | No SSE | 137 | TRP | CE3 | O5 | A | 389 | 3.62 | van der Waals | A | No SSE | 137 | TRP | CZ2 | C1 | A | 389 | 3.73 | van der Waals | A | No SSE | 137 | TRP | CZ2 | O1 | A | 389 | 3.63 | van der Waals | A | No SSE | 137 | TRP | CZ3 | C1 | A | 389 | 3.67 | van der Waals | A | No SSE | 137 | TRP | CH2 | C1 | A | 389 | 3.57 | van der Waals | A | No SSE | 137 | TRP | CH2 | O1 | A | 389 | 3.83 | van der Waals | A | No SSE | 181 | GLU | CD | C4 | A | 389 | 3.63 | van der Waals | A | No SSE | 181 | GLU | CD | O2 | A | 389 | 3.98 | van der Waals | A | No SSE | 181 | GLU | CD | O4 | A | 389 | 2.99 | van der Waals | A | No SSE | 181 | GLU | OE1 | C4 | A | 389 | 3.26 | van der Waals | A | No SSE | 181 | GLU | OE1 | C5 | A | 389 | 3.95 | van der Waals | A | No SSE | 181 | GLU | OE1 | O4 | A | 389 | 2.55 | H.Bond | A | No SSE | 181 | GLU | OE2 | C2 | A | 389 | 3.68 | van der Waals | A | No SSE | 181 | GLU | OE2 | C4 | A | 389 | 3.64 | van der Waals | A | No SSE | 181 | GLU | OE2 | O2 | A | 389 | 3.02 | H.Bond | A | No SSE | 181 | GLU | OE2 | O4 | A | 389 | 2.93 | H.Bond | A | No SSE | 183 | LYS | CD | O1 | A | 389 | 3.77 | van der Waals | A | No SSE | 183 | LYS | CE | O1 | A | 389 | 3.75 | van der Waals | A | No SSE | 183 | LYS | NZ | O1 | A | 389 | 3.01 | H.Bond | A | 217-223 H: 1 | 217 | GLU | CD | O2 | A | 389 | 3.86 | van der Waals | A | 217-223 H: 1 | 217 | GLU | OE1 | O2 | A | 389 | 3.01 | H.Bond | A | 217-223 H: 1 | 220 | HIS | CE1 | C2 | A | 389 | 3.82 | van der Waals | A | 217-223 H: 1 | 220 | HIS | CE1 | O1 | A | 389 | 3.6 | van der Waals | A | 217-223 H: 1 | 220 | HIS | CE1 | O2 | A | 389 | 3.24 | van der Waals | A | 217-223 H: 1 | 220 | HIS | NE2 | O1 | A | 389 | 3.27 | H.Bond | A | 217-223 H: 1 | 220 | HIS | NE2 | O2 | A | 389 | 3.41 | H.Bond | A | 245-246 S: 1 | 245 | ASP | OD2 | O4 | A | 389 | 3.27 | H.Bond | A | No SSE | 255 | ASP | OD2 | O1 | A | 389 | 3.4 | H.Bond | A | No SSE | 287 | ASP | CG | O3 | A | 389 | 3.68 | van der Waals | A | No SSE | 287 | ASP | OD1 | O3 | A | 389 | 3.69 | H.Bond | A | No SSE | 287 | ASP | OD2 | C2 | A | 389 | 3.92 | van der Waals | A | No SSE | 287 | ASP | OD2 | C3 | A | 389 | 3.64 | van der Waals | A | No SSE | 287 | ASP | OD2 | C4 | A | 389 | 3.9 | van der Waals | A | No SSE | 287 | ASP | OD2 | O2 | A | 389 | 3.02 | H.Bond | A | No SSE | 287 | ASP | OD2 | O3 | A | 389 | 2.8 | H.Bond | A | No SSE | 287 | ASP | OD2 | O4 | A | 389 | 3.12 | H.Bond | A | Water | 408 | HOH | O | O4 | A | 389 | 2.98 | H.Bond | A | Water | 409 | HOH | O | C1 | A | 389 | 3.41 | van der Waals | A | Water | 409 | HOH | O | C2 | A | 389 | 3.65 | van der Waals | A | Water | 409 | HOH | O | O1 | A | 389 | 3.39 | H.Bond | A | Water | 409 | HOH | O | O2 | A | 389 | 2.84 | H.Bond | A | Water | 409 | HOH | O | O3 | A | 389 | 3.67 | H.Bond | A | Water | 585 | HOH | O | C5 | A | 389 | 3.53 | van der Waals | A | Water | 585 | HOH | O | O5 | A | 389 | 2.71 | H.Bond | A | Water | 692 | HOH | O | C1 | A | 389 | 3.67 | van der Waals | A | Water | 692 | HOH | O | C3 | A | 389 | 3.9 | van der Waals | A | Water | 692 | HOH | O | O3 | A | 389 | 3.01 | H.Bond | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 5XIA | STRUCTURES OF D-XYLOSE ISOMERASE FROM ARTHROBACTER STRAIN B3728 CONTAINING THE INHIBITORS XYLITOL AN | X-RAY | 2.50 | 0.135 |
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: HLLLSLSHSS
+4w
> Sequence: WHFWEKEHDD
|
XYL /(400) |
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> Graphics rep1:
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 14-17 H: 5 | 15 | TRP | NE1 | O3 | A | 400 | 3.43 | H.Bond | A | 14-17 H: 5 | 15 | TRP | CE2 | O3 | A | 400 | 3.93 | van der Waals | A | No SSE | 53 | HIS | CD2 | O5 | A | 400 | 3.69 | van der Waals | A | No SSE | 53 | HIS | CE1 | C5 | A | 400 | 3.88 | van der Waals | A | No SSE | 53 | HIS | CE1 | O5 | A | 400 | 3.65 | van der Waals | A | No SSE | 53 | HIS | NE2 | C5 | A | 400 | 3.38 | H.Bond | A | No SSE | 53 | HIS | NE2 | O5 | A | 400 | 2.77 | H.Bond | A | No SSE | 93 | PHE | CE2 | O5 | A | 400 | 3.81 | van der Waals | A | No SSE | 136 | TRP | CB | C4 | A | 400 | 3.87 | van der Waals | A | No SSE | 136 | TRP | CB | C5 | A | 400 | 3.95 | van der Waals | A | No SSE | 136 | TRP | CB | O5 | A | 400 | 3.58 | van der Waals | A | No SSE | 136 | TRP | CD2 | C1 | A | 400 | 3.87 | van der Waals | A | No SSE | 136 | TRP | CD2 | C2 | A | 400 | 3.6 | van der Waals | A | No SSE | 136 | TRP | CE2 | C1 | A | 400 | 3.78 | van der Waals | A | No SSE | 136 | TRP | CE2 | C2 | A | 400 | 3.89 | van der Waals | A | No SSE | 136 | TRP | CE2 | O1 | A | 400 | 3.72 | van der Waals | A | No SSE | 136 | TRP | CE3 | C1 | A | 400 | 3.81 | van der Waals | A | No SSE | 136 | TRP | CE3 | C2 | A | 400 | 3.73 | van der Waals | A | No SSE | 136 | TRP | CE3 | C3 | A | 400 | 3.75 | van der Waals | A | No SSE | 136 | TRP | CE3 | O5 | A | 400 | 3.49 | van der Waals | A | No SSE | 136 | TRP | CZ2 | C1 | A | 400 | 3.63 | van der Waals | A | No SSE | 136 | TRP | CZ2 | O1 | A | 400 | 3.45 | van der Waals | A | No SSE | 136 | TRP | CZ3 | C1 | A | 400 | 3.6 | van der Waals | A | No SSE | 136 | TRP | CH2 | C1 | A | 400 | 3.5 | van der Waals | A | No SSE | 136 | TRP | CH2 | O1 | A | 400 | 3.77 | van der Waals | A | 176-180 S: 1 | 180 | GLU | CD | C4 | A | 400 | 3.94 | van der Waals | A | 176-180 S: 1 | 180 | GLU | CD | O4 | A | 400 | 3.21 | van der Waals | A | 176-180 S: 1 | 180 | GLU | OE1 | C4 | A | 400 | 3.3 | van der Waals | A | 176-180 S: 1 | 180 | GLU | OE1 | C5 | A | 400 | 3.94 | van der Waals | A | 176-180 S: 1 | 180 | GLU | OE1 | O4 | A | 400 | 2.55 | H.Bond | A | 176-180 S: 1 | 180 | GLU | OE2 | C2 | A | 400 | 3.92 | van der Waals | A | 176-180 S: 1 | 180 | GLU | OE2 | C4 | A | 400 | 3.99 | van der Waals | A | 176-180 S: 1 | 180 | GLU | OE2 | O2 | A | 400 | 3.27 | H.Bond | A | 176-180 S: 1 | 180 | GLU | OE2 | O4 | A | 400 | 3.14 | H.Bond | A | No SSE | 182 | LYS | CD | O1 | A | 400 | 3.59 | van der Waals | A | No SSE | 182 | LYS | CE | O1 | A | 400 | 3.59 | van der Waals | A | No SSE | 182 | LYS | NZ | C1 | A | 400 | 3.98 | H.Bond | A | No SSE | 182 | LYS | NZ | O1 | A | 400 | 2.77 | H.Bond | A | 210-217 S: 1 | 216 | GLU | CD | O2 | A | 400 | 3.69 | van der Waals | A | 210-217 S: 1 | 216 | GLU | OE1 | O2 | A | 400 | 3.03 | H.Bond | A | 210-217 S: 1 | 216 | GLU | OE2 | O2 | A | 400 | 3.88 | H.Bond | A | 219-224 H: 5 | 219 | HIS | CE1 | O1 | A | 400 | 3.72 | van der Waals | A | 219-224 H: 5 | 219 | HIS | CE1 | O2 | A | 400 | 3.42 | van der Waals | A | 219-224 H: 5 | 219 | HIS | NE2 | O1 | A | 400 | 3.16 | H.Bond | A | 219-224 H: 5 | 219 | HIS | NE2 | O2 | A | 400 | 3.17 | H.Bond | A | 241-245 S: 1 | 244 | ASP | OD2 | O4 | A | 400 | 3.24 | H.Bond | A | 289-292 S: 1 | 292 | ASP | CG | O3 | A | 400 | 3.56 | van der Waals | A | 289-292 S: 1 | 292 | ASP | OD1 | C2 | A | 400 | 3.88 | van der Waals | A | 289-292 S: 1 | 292 | ASP | OD1 | C3 | A | 400 | 3.67 | van der Waals | A | 289-292 S: 1 | 292 | ASP | OD1 | C4 | A | 400 | 3.83 | van der Waals | A | 289-292 S: 1 | 292 | ASP | OD1 | O2 | A | 400 | 3.01 | H.Bond | A | 289-292 S: 1 | 292 | ASP | OD1 | O3 | A | 400 | 2.86 | H.Bond | A | 289-292 S: 1 | 292 | ASP | OD1 | O4 | A | 400 | 2.92 | H.Bond | A | 289-292 S: 1 | 292 | ASP | OD2 | O3 | A | 400 | 3.34 | H.Bond | A | Water | 506 | HOH | O | C1 | A | 400 | 3.8 | van der Waals | A | Water | 506 | HOH | O | C3 | A | 400 | 3.4 | van der Waals | A | Water | 506 | HOH | O | O3 | A | 400 | 2.54 | H.Bond | A | Water | 507 | HOH | O | C1 | A | 400 | 3.75 | van der Waals | A | Water | 507 | HOH | O | C2 | A | 400 | 3.86 | van der Waals | A | Water | 507 | HOH | O | O1 | A | 400 | 3.88 | H.Bond | A | Water | 507 | HOH | O | O2 | A | 400 | 2.94 | H.Bond | A | Water | 507 | HOH | O | O3 | A | 400 | 3.7 | H.Bond | A | Water | 508 | HOH | O | C5 | A | 400 | 3.55 | van der Waals | A | Water | 508 | HOH | O | O5 | A | 400 | 2.65 | H.Bond | A | Water | 509 | HOH | O | C5 | A | 400 | 3.89 | van der Waals | A | Water | 509 | HOH | O | O4 | A | 400 | 3.08 | H.Bond | |