Finding MtlSFMs for Metals in the PDB entry '2Q5B' ... |
PDB Entry | Title | Determination Method | Resolution | R-Factor |
2Q5B | HIGH RESOLUTION STRUCTURE OF PLASTOCYANIN FROM PHO | X-RAY DIFFRACTION | 1.45 | 0.191
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| 2Q5B has 11 MtlSFMs: |
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| Motif No. / Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LSLHL
> Sequence: PHCHM
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CU /(106) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 38 | PRO | O | CU | A | 106 | 3.68 | van der Waals | A | 39-43 S: -1 | 39 | HIS | CA | CU | A | 106 | 3.74 | van der Waals | A | 39-43 S: -1 | 39 | HIS | CB | CU | A | 106 | 3.59 | van der Waals | A | 39-43 S: -1 | 39 | HIS | CG | CU | A | 106 | 3.15 | van der Waals | A | 39-43 S: -1 | 39 | HIS | ND1 | CU | A | 106 | 2.05 | H.Bond | A | 39-43 S: -1 | 39 | HIS | CE1 | CU | A | 106 | 2.92 | van der Waals | A | No SSE | 89 | CYS | CB | CU | A | 106 | 3.23 | van der Waals | A | No SSE | 89 | CYS | SG | CU | A | 106 | 2.25 | van der Waals | A | 92-96 H: 5 | 92 | HIS | CB | CU | A | 106 | 3.43 | van der Waals | A | 92-96 H: 5 | 92 | HIS | CG | CU | A | 106 | 3.09 | van der Waals | A | 92-96 H: 5 | 92 | HIS | ND1 | CU | A | 106 | 2.08 | H.Bond | A | 92-96 H: 5 | 92 | HIS | CE1 | CU | A | 106 | 3.03 | van der Waals | A | No SSE | 97 | MET | CG | CU | A | 106 | 3.95 | van der Waals | A | No SSE | 97 | MET | SD | CU | A | 106 | 2.61 | van der Waals | A | No SSE | 97 | MET | CE | CU | A | 106 | 3.44 | van der Waals | |
| 2 / A |
> Structure: LH
+1w
> Sequence: DD
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ZN /(107) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 44 | ASP | CG | ZN | A | 107 | 2.77 | ZN Tetrahedral | A | No SSE | 44 | ASP | OD1 | ZN | A | 107 | 2.01 | ZN Tetrahedral | A | No SSE | 44 | ASP | OD2 | ZN | A | 107 | 2.88 | ZN Tetrahedral | A | 45-51 H: 5 | 45 | ASP | CG | ZN | A | 107 | 3.15 | Non-bonded Interaction | A | 45-51 H: 5 | 45 | ASP | OD1 | ZN | A | 107 | 2.17 | ZN Tetrahedral | A | 45-51 H: 5 | 45 | ASP | OD2 | ZN | A | 107 | 3.5 | Non-bonded Interaction | A | Water | 613 | HOH | O | ZN | A | 107 | 1.95 | ZN Tetrahedral , Covalent | |
| 3 / A |
> Structure: SS
+1w
> Sequence: LY
|
K /(502) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 39-43 S: -1 | 42 | LEU | CD1 | K | A | 502 | 3.93 | | A | 83-88 S: -1 | 88 | TYR | CE2 | K | A | 502 | 3.88 | | A | 83-88 S: -1 | 88 | TYR | CZ | K | A | 502 | 3.82 | | A | 83-88 S: -1 | 88 | TYR | OH | K | A | 502 | 2.85 | | A | Water | 607 | HOH | O | K | A | 502 | 2.76 | | |
| 4 / A |
> Structure: SLHS
> Sequence: LFDQTYY
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K /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 39-43 S: -1 | 42 | LEU | O | K | A | 501 | 3.6 | | A | 39-43 S: -1 | 43 | PHE | CA | K | A | 501 | 3.69 | | A | 39-43 S: -1 | 43 | PHE | C | K | A | 501 | 3.78 | | A | No SSE | 44 | ASP | N | K | A | 501 | 2.93 | | A | No SSE | 44 | ASP | CA | K | A | 501 | 3.85 | | A | No SSE | 44 | ASP | CB | K | A | 501 | 3.67 | | A | 45-51 H: 5 | 47 | GLN | CB | K | A | 501 | 3.61 | | A | 45-51 H: 5 | 47 | GLN | CG | K | A | 501 | 3.62 | | A | 83-88 S: -1 | 86 | THR | C | K | A | 501 | 3.6 | | A | 83-88 S: -1 | 86 | THR | O | K | A | 501 | 2.73 | | A | 83-88 S: -1 | 87 | TYR | CA | K | A | 501 | 3.8 | | A | 83-88 S: -1 | 88 | TYR | CD1 | K | A | 501 | 3.55 | | A | 83-88 S: -1 | 88 | TYR | CE1 | K | A | 501 | 3.72 | | |
| 5 / B |
> Structure: LSLHL
> Sequence: PHCHM
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CU /(106) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 38 | PRO | O | CU | B | 106 | 3.89 | van der Waals | B | 39-43 S: -1 | 39 | HIS | CA | CU | B | 106 | 3.77 | van der Waals | B | 39-43 S: -1 | 39 | HIS | CB | CU | B | 106 | 3.54 | van der Waals | B | 39-43 S: -1 | 39 | HIS | CG | CU | B | 106 | 3.13 | van der Waals | B | 39-43 S: -1 | 39 | HIS | ND1 | CU | B | 106 | 2.03 | H.Bond | B | 39-43 S: -1 | 39 | HIS | CE1 | CU | B | 106 | 2.91 | van der Waals | B | No SSE | 89 | CYS | CB | CU | B | 106 | 3.21 | van der Waals | B | No SSE | 89 | CYS | SG | CU | B | 106 | 2.25 | van der Waals | B | 92-96 H: 5 | 92 | HIS | CB | CU | B | 106 | 3.41 | van der Waals | B | 92-96 H: 5 | 92 | HIS | CG | CU | B | 106 | 3.07 | van der Waals | B | 92-96 H: 5 | 92 | HIS | ND1 | CU | B | 106 | 2.05 | H.Bond | B | 92-96 H: 5 | 92 | HIS | CE1 | CU | B | 106 | 3.01 | van der Waals | B | No SSE | 97 | MET | CG | CU | B | 106 | 3.89 | van der Waals | B | No SSE | 97 | MET | SD | CU | B | 106 | 2.57 | van der Waals | B | No SSE | 97 | MET | CE | CU | B | 106 | 3.42 | van der Waals | |
| 6 / B |
> Structure: L
> Sequence: D
|
ZN /(107) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 45 | ASP | CG | ZN | B | 107 | 2.68 | ZN Tetrahedral | B | No SSE | 45 | ASP | OD1 | ZN | B | 107 | 2.04 | ZN Tetrahedral | B | No SSE | 45 | ASP | OD2 | ZN | B | 107 | 2.66 | ZN Tetrahedral | |
| 7 / B |
> Structure: LSHLS
> Sequence: QFGMV
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K /(502) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 15 | GLN | CA | K | B | 502 | 3.52 | | B | No SSE | 15 | GLN | C | K | B | 502 | 3.77 | | B | No SSE | 15 | GLN | CB | K | B | 502 | 3.85 | | B | 16-17 S: 0 | 16 | PHE | N | K | B | 502 | 3.03 | | B | 16-17 S: 0 | 16 | PHE | O | K | B | 502 | 3.78 | | B | 92-96 H: 5 | 96 | GLY | O | K | B | 502 | 3.53 | | B | No SSE | 97 | MET | CA | K | B | 502 | 3.86 | | B | No SSE | 97 | MET | C | K | B | 502 | 3.99 | | B | 98-103 S: 1 | 98 | VAL | N | K | B | 502 | 3.28 | | B | 98-103 S: 1 | 98 | VAL | C | K | B | 502 | 3.64 | | B | 98-103 S: 1 | 98 | VAL | O | K | B | 502 | 2.68 | | |
| 8 / C |
> Structure: LSLHL
> Sequence: PHCHM
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CU /(106) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 38 | PRO | O | CU | C | 106 | 3.76 | van der Waals | C | 39-43 S: -1 | 39 | HIS | CA | CU | C | 106 | 3.79 | van der Waals | C | 39-43 S: -1 | 39 | HIS | CB | CU | C | 106 | 3.56 | van der Waals | C | 39-43 S: -1 | 39 | HIS | CG | CU | C | 106 | 3.13 | van der Waals | C | 39-43 S: -1 | 39 | HIS | ND1 | CU | C | 106 | 2.04 | H.Bond | C | 39-43 S: -1 | 39 | HIS | CE1 | CU | C | 106 | 2.92 | van der Waals | C | No SSE | 89 | CYS | CB | CU | C | 106 | 3.24 | van der Waals | C | No SSE | 89 | CYS | SG | CU | C | 106 | 2.25 | van der Waals | C | 92-96 H: 5 | 92 | HIS | CB | CU | C | 106 | 3.4 | van der Waals | C | 92-96 H: 5 | 92 | HIS | CG | CU | C | 106 | 3.09 | van der Waals | C | 92-96 H: 5 | 92 | HIS | ND1 | CU | C | 106 | 2.09 | H.Bond | C | 92-96 H: 5 | 92 | HIS | CE1 | CU | C | 106 | 3.05 | van der Waals | C | No SSE | 97 | MET | CG | CU | C | 106 | 3.91 | van der Waals | C | No SSE | 97 | MET | SD | CU | C | 106 | 2.57 | van der Waals | C | No SSE | 97 | MET | CE | CU | C | 106 | 3.35 | van der Waals | |
| 9 / C |
> Structure: LH
+2w
> Sequence: DD
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ZN /(107) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 44 | ASP | CG | ZN | C | 107 | 2.77 | ZN Tetrahedral | C | No SSE | 44 | ASP | OD1 | ZN | C | 107 | 2 | ZN Tetrahedral | C | No SSE | 44 | ASP | OD2 | ZN | C | 107 | 2.9 | Non-bonded Interaction | C | 45-51 H: 5 | 45 | ASP | CG | ZN | C | 107 | 3.14 | Non-bonded Interaction | C | 45-51 H: 5 | 45 | ASP | OD1 | ZN | C | 107 | 2.15 | ZN Tetrahedral | C | 45-51 H: 5 | 45 | ASP | OD2 | ZN | C | 107 | 3.51 | Non-bonded Interaction | C | Water | 505 | HOH | O | ZN | C | 107 | 2.04 | ZN Tetrahedral | C | Water | 511 | HOH | O | ZN | C | 107 | 2.16 | ZN Tetrahedral | |
| 10 / C |
> Structure: LL
+1w
> Sequence: HE
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ZN /(108) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 24 | HIS | CG | ZN | C | 108 | 3.62 | Non-bonded Interaction | C | No SSE | 24 | HIS | ND1 | ZN | C | 108 | 2.47 | ZN Tetrahedral | C | No SSE | 24 | HIS | CE1 | ZN | C | 108 | 2.36 | ZN Tetrahedral | C | No SSE | 24 | HIS | NE2 | ZN | C | 108 | 3.41 | Non-bonded Interaction | C | No SSE | 104 | GLU | CD | ZN | C | 108 | 2.94 | Non-bonded Interaction | C | No SSE | 104 | GLU | OE1 | ZN | C | 108 | 3.17 | Non-bonded Interaction | C | No SSE | 104 | GLU | OE2 | ZN | C | 108 | 2.03 | ZN Tetrahedral | C | Water | 582 | HOH | O | ZN | C | 108 | 2 | ZN Tetrahedral | |
| 11 / C |
> Structure: SLHS
+1w
> Sequence: LFDQTYY
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K /(501) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | 39-43 S: -1 | 42 | LEU | O | K | C | 501 | 3.62 | | C | 39-43 S: -1 | 43 | PHE | CA | K | C | 501 | 3.7 | | C | 39-43 S: -1 | 43 | PHE | C | K | C | 501 | 3.76 | | C | No SSE | 44 | ASP | N | K | C | 501 | 2.89 | | C | No SSE | 44 | ASP | CA | K | C | 501 | 3.84 | | C | No SSE | 44 | ASP | CB | K | C | 501 | 3.64 | | C | 45-51 H: 5 | 47 | GLN | CB | K | C | 501 | 3.57 | | C | 45-51 H: 5 | 47 | GLN | CG | K | C | 501 | 3.6 | | C | 83-88 S: -1 | 86 | THR | C | K | C | 501 | 3.58 | | C | 83-88 S: -1 | 86 | THR | O | K | C | 501 | 2.72 | | C | 83-88 S: -1 | 87 | TYR | CA | K | C | 501 | 3.81 | | C | 83-88 S: -1 | 88 | TYR | CD1 | K | C | 501 | 3.58 | | C | 83-88 S: -1 | 88 | TYR | CE1 | K | C | 501 | 3.77 | | C | Water | 513 | HOH | O | K | C | 501 | 2.73 | | |