MtlSFMs: Metals Binding Structural & Functional Motifs - v. β November 2015.
© University Dr Tahar Moulay, Saida.


Project realized by:Deghem Mohamed Amine (in his project of MSc of Biology, 2014-2015)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Metals Binding Structural & Functional Motifs
- MtlSFMs -
Find MtlSFMs by Ligands:
CA   NI   MN   MG   NA   FE   CU   ZN   K    
Find MtlSFMs by PDB entries:
1EXR   1W6S   2BAX   2BCH   2IAX   2O5G   2ZFD   3RM1   3U8I   4PE0   4X9Y   1MFM   1OE1   1SF5   2BWI   2C9V   2IDT   2XMJ   3WA2   4EIR   4FOU   4P5R   1BK0   2BJS   2BMO   2BU9   3WVD   2JB4   2RDQ   4XQ1   3QZB   1NNF   1KJQ   1Q6Z   2AWN   2BKU   2FN3   3DHD   4AV3   4DFF   4DLS   1E9G   1K4O   1LQP   2JFT   2V8U   3P4H   4GRN   4HWW   1SFH   2AU7   2GG2   2GGC   4GG1   4GM0   4GP9   1HYO   1P1M   2HZY   2OS0   3AYX   3HT1   3ZE6   3ZE9   4I71   4UQP   4URH   1C7K   1QTW   2NNO   2NNS   2WYT   4A7V   4XB6   3CVD   1AOL   3VBD   1G3D   4AX3   2BOY   2QDY   2QFP   1O9I   5AK7   2FWF   4ZAV   3C9U   1EK0   2UU8   2BFD   2HDU   1M40   2ASC   1IJV   2Q5B   3SIL   1P36   1NKI   4B7V   1YRC   
Finding MtlSFMs for the metal 'CA' ...
Ligand: IDFull NameFormula Chemistry
CACALCIUM IONCA (2+)CA
There are 62 MtlSFMs:
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
51EXRTHE 1.0 ANGSTROM CRYSTAL STRUCTURE OF CA+2 BOUND CX-RAY DIFFRACTION1.000.134
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLLSH +1w
  > Sequence: DDDTE 		CA
/(1000)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: LLLLH +2w
  > Sequence: DDNTE 		CA
/(1001)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: HLLLH +1w
  > Sequence: DDDHE 		CA
/(1002)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / A   > Structure: H +4w
  > Sequence: E 		CA
/(1003)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / A   > Structure: HLLLH +1w
  > Sequence: DDNLE 		CA
/(1004)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
21W6STHE HIGH RESOLUTION STRUCTURE OF METHANOL DEHYDROGX-RAY DIFFRACTION1.20.158
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLL +1w
  > Sequence: END 		CA
/(1599)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / C   > Structure: HLL +1w
  > Sequence: END 		CA
/(3599)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12BAXATOMIC RESOLUTION STRUCTURE OF THE DOUBLE MUTANT (X-RAY DIFFRACTION1.100.114
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLLH +2w
  > Sequence: YGGD 		CA
/(124)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12BCHA POSSIBLE OF SECOND CALCIUM ION IN INTERFACIAL BIX-RAY DIFFRACTION1.100.104
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLLLH +2w
  > Sequence: YGLGD 		CA
/(124)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12IAXCRYSTAL STRUCTURE OF SQUID GANGLION DFPASE D232S MX-RAY DIFFRACTION1.100.179
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SLSS +4w
  > Sequence: ENND 		CA
/(401)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
42O5GCALMODULIN-SMOOTH MUSCLE LIGHT CHAIN KINASE PEPTIDX-RAY DIFFRACTION1.080.144
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLLLH +1w
  > Sequence: DDDQE 		CA
/(401)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: HLLSH +1w
  > Sequence: DDNYE 		CA
/(402)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: HLLSH +1w
  > Sequence: DDDTE 		CA
/(403)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / A   > Structure: HLLLH +1w
  > Sequence: DDNTE 		CA
/(404)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
62ZFDTHE CRYSTAL STRUCTURE OF PLANT SPECIFIC CALCIUM BIX-RAY DIFFRACTION1.200.180
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLLLH +1w
  > Sequence: SIDLE 		CA
/(227)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: HLLLH +1w
  > Sequence: DKNIE 		CA
/(228)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: HLLSH +1w
  > Sequence: DKDKE 		CA
/(229)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / A   > Structure: HLLLSH
  > Sequence: DQGFEE 		CA
/(230)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / A   > Structure: LL +1w
  > Sequence: NE 		CA
/(231)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / A   > Structure: HL +4w
  > Sequence: DQ 		CA
/(232)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
23RM11.24 ANGSTROM X-RAY STRUCTURE OF BOVINE TRTK12-CA(X-RAY DIFFRACTION1.240.205
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLLLH +1w
  > Sequence: SEDKE 		CA
/(101)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: HLLLH +1w
  > Sequence: DNDEE 		CA
/(102)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
43U8IFUNCTIONALLY SELECTIVE INHIBITION OF GROUP IIA PHOX-RAY DIFFRACTION1.100.205
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLLLH +2w
  > Sequence: FGCYN 		CA
/(201)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: LLLH +2w
  > Sequence: HGGD 		CA
/(202)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: LLLLH +2w
  > Sequence: FGCYN 		CA
/(201)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: LLLH +2w
  > Sequence: HGGD 		CA
/(202)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
44PE0CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN FROM SX-RAY DIFFRACTION1.730.187
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / X   > Structure: HLLLLLH +2w
  > Sequence: SEDKKLKE 		CA
/(102)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / X   > Structure: HLLLLH +1w
  > Sequence: DDDECDE 		CA
/(103)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: HLLLLLH +1w
  > Sequence: SEDKKLKE 		CA
/(102)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / A   > Structure: HLLLLH +2w
  > Sequence: DDDECDE 		CA
/(103)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14X9YWILD-TYPE HUMAN PANCREATIC ALPHA-AMYLASE AT TRUE AX-RAY DIFFRACTION1.070.114
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLHSH +3w
  > Sequence: NNRDHM 		CA
/(502)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
34FOUSTRUCTURE OF THE PILZ-FIMX(EAL DOMAIN)-C-DI-GMP COX-RAY DIFFRACTION2.100.189
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LH +3w
  > Sequence: DE 		CA
/(702)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +1w
  > Sequence: DE 		CA
/(703)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: H +2w
  > Sequence: EE 		CA
/(705)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
31Q6ZHIGH RESOLUTION STRUCTURE OF E28A MUTANT BENZOYLFOX-RAY DIFFRACTION1.000.122
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLL
  > Sequence: DNT 		CA
/(532)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +2w
  > Sequence: D 		CA
/(533)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: H +4w
  > Sequence: A 		CA
/(534)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
32FN3HIGH RESOLUTION STRUCTURE OF S26A MUTANT OF BENZOYX-RAY DIFFRACTION1.000.128
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLL +1w
  > Sequence: DNT 		CA
/(532)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +3w
  > Sequence: D 		CA
/(533)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: H +3w
  > Sequence: A 		CA
/(534)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
24AV3CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA SODIUM PUX-RAY DIFFRACTION2.600.207
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HH
  > Sequence: DDDK 		CA
/(728)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: HH +1w
  > Sequence: DDDK 		CA
/(728)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
24DLSH-RAS SET 1 CACL2 MIXEDX-RAY DIFFRACTION1.820.163
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LL +2w
  > Sequence: FD 		CA
/(201)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: HL +1w
  > Sequence: RVD 		CA
/(204)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
24GG1CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE X-RAY DIFFRACTION1.070.140
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLL +1w
  > Sequence: DNT 		CA
/(602)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +4w
  > Sequence: D 		CA
/(603)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
24GM0CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE X-RAY DIFFRACTION1.070.138
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLL +1w
  > Sequence: DNT 		CA
/(602)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: L +3w
  > Sequence: E 		CA
/(606)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
24GP9CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE X-RAY DIFFRACTION1.070.138
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLL +1w
  > Sequence: DNT 		CA
/(601)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +5w
  > Sequence: D 		CA
/(603)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
21HYOCRYSTAL STRUCTURE OF FUMARYLACETOACETATE HYDROLASEX-RAY DIFFRACTION1.300.181
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SSLSL
  > Sequence: DYEED 		CA
/(1006)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: SSLSL
  > Sequence: DYEED 		CA
/(1007)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12HZYMOUSE FUMARYLACETOACETATE HYDROLASE COMPLEXES WITHX-RAY DIFFRACTION1.350.169
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLL +2w
  > Sequence: GDA 		CA
/(1206)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14I71CRYSTAL STRUCTURE OF THE TRYPANOSOMA BRUCEI INOSINX-RAY DIFFRACTION1.280.127
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LHLH +1w
  > Sequence: DDTD 		CA
/(402)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
11C7KCRYSTAL STRUCTURE OF THE ZINC PROTEASEX-RAY DIFFRACTION1.000.148
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: H +4w
  > Sequence: DT 		CA
/(134)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
11G3DBOVINE BETA-TRYPSIN BOUND TO META-AMIDINO SCHIFF B1.800.170
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLLL +2w
  > Sequence: ENVE 		CA
/(502)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
61O9ICRYSTAL STRUCTURE OF THE Y42F MUTANT OF MANGANESE X-RAY DIFFRACTION1.330.117
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: H
  > Sequence: DD 		CA
/(269)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: H
  > Sequence: DD 		CA
/(269)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / C   > Structure: H
  > Sequence: DD 		CA
/(269)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / D   > Structure: H +1w
  > Sequence: DD 		CA
/(269)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / E   > Structure: H
  > Sequence: DD 		CA
/(269)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / F   > Structure: H +1w
  > Sequence: DD 		CA
/(269)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]