MtlSFMs: Metals Binding Structural & Functional Motifs - v. β November 2015.
© University Dr Tahar Moulay, Saida.



Project realized by:Deghem Mohamed Amine (in his project of MSc of Biology, 2014-2015)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Metals Binding Structural & Functional Motifs
- MtlSFMs -
Find MtlSFMs by Ligands:
CA   NI   MN   MG   NA   FE   CU   ZN   K    
Find MtlSFMs by PDB entries:
1EXR   1W6S   2BAX   2BCH   2IAX   2O5G   2ZFD   3RM1   3U8I   4PE0   4X9Y   1MFM   1OE1   1SF5   2BWI   2C9V   2IDT   2XMJ   3WA2   4EIR   4FOU   4P5R   1BK0   2BJS   2BMO   2BU9   3WVD   2JB4   2RDQ   4XQ1   3QZB   1NNF   1KJQ   1Q6Z   2AWN   2BKU   2FN3   3DHD   4AV3   4DFF   4DLS   1E9G   1K4O   1LQP   2JFT   2V8U   3P4H   4GRN   4HWW   1SFH   2AU7   2GG2   2GGC   4GG1   4GM0   4GP9   1HYO   1P1M   2HZY   2OS0   3AYX   3HT1   3ZE6   3ZE9   4I71   4UQP   4URH   1C7K   1QTW   2NNO   2NNS   2WYT   4A7V   4XB6   3CVD   1AOL   3VBD   1G3D   4AX3   2BOY   2QDY   2QFP   1O9I   5AK7   2FWF   4ZAV   3C9U   1EK0   2UU8   2BFD   2HDU   1M40   2ASC   1IJV   2Q5B   3SIL   1P36   1NKI   4B7V   1YRC   
Finding MtlSFMs for the metal 'CU' ...
Ligand: IDFull NameFormula Chemistry
CUCOPPER (II) IONCU (2+)CU
There are 32 MtlSFMs:
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
11MFMMONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q AT ATOMX-RAY DIFFRACTION1.020.118
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLS +2w
  > Sequence: HHHH
CU
/(155)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
21OE1ATOMIC RESOLUTION STRUCTURE OF THE WILDTYPE NATIVEX-RAY DIFFRACTION1.040.119
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLHL
  > Sequence: HCHM
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: SLS +1w
  > Sequence: DHH
CU
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
11SF5STRUCTURE OF OXIDIZED STATE OF THE P94A MUTANT OF X-RAY DIFFRACTION1.100.127
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLLLL
  > Sequence: PHCHM
CU
/(107)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
22BWIATOMIC RESOLUTION STRUCTURE OF NITRITE -SOAKED ACHX-RAY DIFFRACTION1.10.121
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLHL
  > Sequence: HCHM
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: SLS +1w
  > Sequence: DHH
CU
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
22C9VATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXX-RAY DIFFRACTION1.070.132
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLS +3w
  > Sequence: HHHVH
CU
/(154)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / F   > Structure: SLS +3w
  > Sequence: HHHVH
CU
/(154)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
12IDTSTRUCTURE OF M98Q MUTANT OF AMICYANIN, CU(II)X-RAY DIFFRACTION1.000.124
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLLL
  > Sequence: HCHQ
CU
/(107)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
42XMJVISUALISING THE METAL-BINDING VERSATILITY OF COPPEX-RAY DIFFRACTION1.080.117
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: H
  > Sequence: C
CU
/(1065)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: LH
  > Sequence: ACC
CU
/(1068)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: LH
  > Sequence: ACC
CU
/(1065)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: H
  > Sequence: AC
CU
/(1066)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
13WA2HIGH RESOLUTION CRYSTAL STRUCTURE OF COPPER AMINE X-RAY DIFFRACTION1.080.131
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / X   > Structure: SS +2w
  > Sequence: HHH
CU
/(701)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
24EIRSTRUCTURAL BASIS FOR SUBSTRATE TARGETING AND CATALX-RAY DIFFRACTION1.100.133
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LS
  > Sequence: HQY
CU
/(301)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LS +1w
  > Sequence: HQY
CU
/(301)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
14P5RSTRUCTURE OF OXIDIZED W45Y MUTANT OF AMICYANINX-RAY DIFFRACTION1.090.129
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLLLL
  > Sequence: PHCHM
CU
/(201)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
22WYT1.0 A RESOLUTION STRUCTURE OF L38V SOD1 MUTANTX-RAY DIFFRACTION1.000.129
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLS +2w
  > Sequence: HHHVH
CU
/(154)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / F   > Structure: SLS +3w
  > Sequence: HHHVH
CU
/(154)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
24A7VSTRUCTURE OF HUMAN I113T SOD1 MUTANT COMPLEXED WITX-RAY DIFFRACTION1.000.159
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SLS +1w
  > Sequence: HHHH
CU
/(1157)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / F   > Structure: SLS +1w
  > Sequence: HHHVH
CU
/(1156)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
11G3DBOVINE BETA-TRYPSIN BOUND TO META-AMIDINO SCHIFF B1.800.170
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HL +1w
  > Sequence: HS
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
84AX3STRUCTURE OF THREE-DOMAIN HEME-CU NITRITE REDUCTASX-RAY DIFFRACTION1.60.165
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLLHL
  > Sequence: PHCHM
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: SLS
  > Sequence: DHH
CU
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: LLHL
  > Sequence: HCHM
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: SLS +1w
  > Sequence: DHH
CU
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / C   > Structure: LLHL
  > Sequence: HCHM
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / C   > Structure: SLS +1w
  > Sequence: DHH
CU
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
7 / D   > Structure: LLHL
  > Sequence: HCHM
CU
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
8 / D   > Structure: SLS +1w
  > Sequence: DHH
CU
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
22Q5BHIGH RESOLUTION STRUCTURE OF PLASTOCYANIN FROM PHOX-RAY DIFFRACTION1.450.191
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LSLHL
  > Sequence: PHCHM
CU
/(106)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LSLHL
  > Sequence: PHCHM
CU
/(106)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]