MtlSFMs: Metals Binding Structural & Functional Motifs - v. β November 2015.
© University Dr Tahar Moulay, Saida.



Project realized by:Deghem Mohamed Amine (in his project of MSc of Biology, 2014-2015)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Metals Binding Structural & Functional Motifs
- MtlSFMs -
Find MtlSFMs by Ligands:
CA   NI   MN   MG   NA   FE   CU   ZN   K    
Find MtlSFMs by PDB entries:
1EXR   1W6S   2BAX   2BCH   2IAX   2O5G   2ZFD   3RM1   3U8I   4PE0   4X9Y   1MFM   1OE1   1SF5   2BWI   2C9V   2IDT   2XMJ   3WA2   4EIR   4FOU   4P5R   1BK0   2BJS   2BMO   2BU9   3WVD   2JB4   2RDQ   4XQ1   3QZB   1NNF   1KJQ   1Q6Z   2AWN   2BKU   2FN3   3DHD   4AV3   4DFF   4DLS   1E9G   1K4O   1LQP   2JFT   2V8U   3P4H   4GRN   4HWW   1SFH   2AU7   2GG2   2GGC   4GG1   4GM0   4GP9   1HYO   1P1M   2HZY   2OS0   3AYX   3HT1   3ZE6   3ZE9   4I71   4UQP   4URH   1C7K   1QTW   2NNO   2NNS   2WYT   4A7V   4XB6   3CVD   1AOL   3VBD   1G3D   4AX3   2BOY   2QDY   2QFP   1O9I   5AK7   2FWF   4ZAV   3C9U   1EK0   2UU8   2BFD   2HDU   1M40   2ASC   1IJV   2Q5B   3SIL   1P36   1NKI   4B7V   1YRC   
Finding MtlSFMs for the metal 'MG' ...
Ligand: IDFull NameFormula Chemistry
MGMAGNESIUM IONMG (2+)MG
There are 66 MtlSFMs:
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
33WVDCRYSTAL STRUCTURE OF NITRILE HYDRATASE MUTANT BR56X-RAY DIFFRACTION1.180.143
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: +6w
  > Sequence:
MG
/(302)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: +6w
  > Sequence:
MG
/(301)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: L +4w
  > Sequence: V
MG
/(302)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
22RDQCRYSTAL STRUCTURE OF PTLH WITH FE/ALPHA KETOGLUTARX-RAY DIFFRACTION1.310.179
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: L +8w
  > Sequence: D
MG
/(267)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: +6w
  > Sequence:
MG
/(268)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
21KJQCRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE TRX-RAY DIFFRACTION1.050.190
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: SS +4w
  > Sequence: EE
MG
/(393)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: SS +4w
  > Sequence: EE
MG
/(393)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
11Q6ZHIGH RESOLUTION STRUCTURE OF E28A MUTANT BENZOYLFOX-RAY DIFFRACTION1.000.122
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HL +1w
  > Sequence: NLR
MG
/(531)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
42AWNCRYSTAL STRUCTURE OF THE ADP-MG-BOUND E. COLI MALKX-RAY DIFFRACTION2.300.230
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HSL +3w
  > Sequence: SDE
MG
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: HSL +3w
  > Sequence: SDE
MG
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / C   > Structure: H
  > Sequence: S
MG
/(503)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / D   > Structure: HS +2w
  > Sequence: SD
MG
/(504)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
22BKUKAP95P:RANGTP COMPLEXX-RAY DIFFRACTION2.700.226
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HLS +2w
  > Sequence: TTD
MG
/(221)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / C   > Structure: HLS +3w
  > Sequence: TTD
MG
/(221)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
12FN3HIGH RESOLUTION STRUCTURE OF S26A MUTANT OF BENZOYX-RAY DIFFRACTION1.000.128
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HL +1w
  > Sequence: NLR
MG
/(531)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
43DHDCRYSTAL STRUCTURE OF HUMAN NAMPT COMPLEXED WITH NIX-RAY DIFFRACTION2.000.182
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: L +2w
  > Sequence: D
MG
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: L +2w
  > Sequence: R
MG
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: LLH +2w
  > Sequence: RRK
MG
/(501)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: L +3w
  > Sequence: D
MG
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
24AV3CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA SODIUM PUX-RAY DIFFRACTION2.600.207
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HH
  > Sequence: NDD
MG
/(727)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: HH
  > Sequence: NDD
MG
/(727)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
24DFFTHE SAR DEVELOPMENT OF DIHYDROIMIDAZOISOQUINOLINE X-RAY DIFFRACTION2.110.192
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HLL +5w
  > Sequence: HDH
MG
/(801)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: HLLH +6w
  > Sequence: HDHH
MG
/(802)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
24DLSH-RAS SET 1 CACL2 MIXEDX-RAY DIFFRACTION1.820.163
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HLS +2w
  > Sequence: STD
MG
/(202)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +3w
  > Sequence: Q
MG
/(203)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
42JFTCRYSTAL STRUCTURE OF THE PPM SER-THR PHOSPHATASE MX-RAY DIFFRACTION1.080.116
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: S +4w
  > Sequence: DG
MG
/(1234)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: LH +5w
  > Sequence: DD
MG
/(1236)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: LLH +5w
  > Sequence: DRD
MG
/(1237)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / A   > Structure: LH +6w
  > Sequence: RD
MG
/(1238)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
21HYOCRYSTAL STRUCTURE OF FUMARYLACETOACETATE HYDROLASEX-RAY DIFFRACTION1.300.181
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLHLS
  > Sequence: DWKGT
MG
/(1004)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LLHLS
  > Sequence: DWKGT
MG
/(1005)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
23AYXMEMBRANE-BOUND RESPIRATORY [NIFE] HYDROGENASE FROMX-RAY DIFFRACTION1.180.139
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HSH +3w
  > Sequence: ECH
MG
/(701)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / C   > Structure: HSH +3w
  > Sequence: ECH
MG
/(701)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
24UQPHIGH-RESOLUTION STRUCTURE OF THE D. FRUCTOSOVORANSX-RAY DIFFRACTION1.420.122
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / Q   > Structure: HSH +3w
  > Sequence: ELH
MG
/(1554)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / R   > Structure: HSH +3w
  > Sequence: ELH
MG
/(1557)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
44URHHIGH-RESOLUTION STRUCTURE OF PARTIALLY OXIDIZED D.X-RAY DIFFRACTION1.440.144
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / Q   > Structure: HSH +3w
  > Sequence: ELH
MG
/(1552)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / Q   > Structure: L +1w
  > Sequence: N
MG
/(1554)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / R   > Structure: HSLSH +7w
  > Sequence: EEKQLH
MG
/(1552)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / S   > Structure: HSH +3w
  > Sequence: ELH
MG
/(1552)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
142BOYCRYSTAL STRUCTURE OF 3-CHLOROCATECHOL 1,2-DIOXYGENX-RAY DIFFRACTION1.90.178
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: L +4w
  > Sequence: N
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: +6w
  > Sequence:
MG
/(1259)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: +4w
  > Sequence:
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: +7w
  > Sequence:
MG
/(1259)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / B   > Structure: +3w
  > Sequence:
MG
/(1260)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / C   > Structure: +5w
  > Sequence:
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
7 / C   > Structure: +3w
  > Sequence:
MG
/(1259)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
8 / C   > Structure: +2w
  > Sequence:
MG
/(1260)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
9 / D   > Structure: +5w
  > Sequence:
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
10 / D   > Structure: +4w
  > Sequence:
MG
/(1259)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
11 / E   > Structure: L +2w
  > Sequence: E
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
12 / F   > Structure: +5w
  > Sequence:
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
13 / G   > Structure: +5w
  > Sequence:
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
14 / H   > Structure: +5w
  > Sequence:
MG
/(1258)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
32QDYCRYSTAL STRUCTURE OF FE-TYPE NHASE FROM RHODOCOCCUX-RAY DIFFRACTION1.300.131
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: S +2w
  > Sequence: G
MG
/(2007)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: +6w
  > Sequence:
MG
/(2005)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: +3w
  > Sequence:
MG
/(2006)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
103C9UAATHIL COMPLEXED WITH ADP AND TPPX-RAY DIFFRACTION1.480.201
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LHLS +1w
  > Sequence: DDRD
MG
/(309)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: LSH +2w
  > Sequence: DTD
MG
/(310)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: S +3w
  > Sequence: D
MG
/(311)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / A   > Structure: L +3w
  > Sequence: D
MG
/(312)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / A   > Structure: SH +2w
  > Sequence: DD
MG
/(313)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / A   > Structure: S
  > Sequence: N
MG
/(314)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
7 / B   > Structure: LSH +2w
  > Sequence: DTD
MG
/(309)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
8 / B   > Structure: L +3w
  > Sequence: D
MG
/(310)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
9 / B   > Structure: SH +3w
  > Sequence: DD
MG
/(311)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
10 / B   > Structure: LHLS +2w
  > Sequence: DDRD
MG
/(312)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]