MtlSFMs: Metals Binding Structural & Functional Motifs - v. β November 2015.
© University Dr Tahar Moulay, Saida.


Project realized by:Deghem Mohamed Amine (in his project of MSc of Biology, 2014-2015)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Metals Binding Structural & Functional Motifs
- MtlSFMs -
Find MtlSFMs by Ligands:
CA   NI   MN   MG   NA   FE   CU   ZN   K    
Find MtlSFMs by PDB entries:
1EXR   1W6S   2BAX   2BCH   2IAX   2O5G   2ZFD   3RM1   3U8I   4PE0   4X9Y   1MFM   1OE1   1SF5   2BWI   2C9V   2IDT   2XMJ   3WA2   4EIR   4FOU   4P5R   1BK0   2BJS   2BMO   2BU9   3WVD   2JB4   2RDQ   4XQ1   3QZB   1NNF   1KJQ   1Q6Z   2AWN   2BKU   2FN3   3DHD   4AV3   4DFF   4DLS   1E9G   1K4O   1LQP   2JFT   2V8U   3P4H   4GRN   4HWW   1SFH   2AU7   2GG2   2GGC   4GG1   4GM0   4GP9   1HYO   1P1M   2HZY   2OS0   3AYX   3HT1   3ZE6   3ZE9   4I71   4UQP   4URH   1C7K   1QTW   2NNO   2NNS   2WYT   4A7V   4XB6   3CVD   1AOL   3VBD   1G3D   4AX3   2BOY   2QDY   2QFP   1O9I   5AK7   2FWF   4ZAV   3C9U   1EK0   2UU8   2BFD   2HDU   1M40   2ASC   1IJV   2Q5B   3SIL   1P36   1NKI   4B7V   1YRC   
Finding MtlSFMs for the metal 'NA' ...
Ligand: IDFull NameFormula Chemistry
NASODIUM IONNA (1+)NA
There are 38 MtlSFMs:
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
43U8IFUNCTIONALLY SELECTIVE INHIBITION OF GROUP IIA PHOX-RAY DIFFRACTION1.100.205
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LHL +3w
  > Sequence: PRVP 		NA
/(204)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: LLLH +1w
  > Sequence: SYKR 		NA
/(125)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / B   > Structure: LHL +3w
  > Sequence: PRVP 		NA
/(204)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: LLLH +2w
  > Sequence: SYKR 		NA
/(126)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
22C9VATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN SUPEROXX-RAY DIFFRACTION1.070.132
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: L +3w
  > Sequence: L 		NA
/(158)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / F   > Structure: L +4w
  > Sequence: L 		NA
/(159)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12XMJVISUALISING THE METAL-BINDING VERSATILITY OF COPPEX-RAY DIFFRACTION1.080.117
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LL +1w
  > Sequence: DQ 		NA
/(1069)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
13WA2HIGH RESOLUTION CRYSTAL STRUCTURE OF COPPER AMINE X-RAY DIFFRACTION1.080.131
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / X   > Structure: LSLLLS +1w
  > Sequence: RDMFYDI 		NA
/(702)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14P5RSTRUCTURE OF OXIDIZED W45Y MUTANT OF AMICYANINX-RAY DIFFRACTION1.090.129
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLSSS
  > Sequence: TPLYK 		NA
/(202)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14XQ1CRYSTAL STRUCTURE OF HEMERYTHRIN: L114A MUTANT X-RAY DIFFRACTION1.400.158
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: H
  > Sequence: W 		NA
/(204)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
21KJQCRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE TRX-RAY DIFFRACTION1.050.190
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / B   > Structure: HL +3w
  > Sequence: MHA 		NA
/(394)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: SLH +4w
  > Sequence: NVPC 		NA
/(394)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14GRNCRYSTAL STRUCTURE OF PAAM MUTANT OF HUMAN MIFX-RAY DIFFRACTION1.250.128
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / C   > Structure: SLL
  > Sequence: AFGG 		NA
/(203)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
21SFHREDUCED STATE OF AMICYANIN MUTANT P94FX-RAY DIFFRACTION1.050.122
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / B   > Structure: LLL +2w
  > Sequence: SSP 		NA
/(501)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: L +2w
  > Sequence: E 		NA
/(502)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12AU7THE R43Q ACTIVE SITE VARIANT OF E.COLI INORGANIC PX-RAY DIFFRACTION1.050.123
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLL +3w
  > Sequence: KEK 		NA
/(206)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12GG2NOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITOX-RAY DIFFRACTION1.000.136
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SLSS +2w
  > Sequence: INVS 		NA
/(703)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
12GGCNOVEL BACTERIAL METHIONINE AMINOPEPTIDASE INHIBITOX-RAY DIFFRACTION1.000.120
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SLSS +2w
  > Sequence: INVS 		NA
/(1103)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14GG1CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE X-RAY DIFFRACTION1.070.140
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HL +1w
  > Sequence: NLR 		NA
/(604)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14GM0CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE X-RAY DIFFRACTION1.070.138
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HL +1w
  > Sequence: NLR 		NA
/(605)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
14GP9CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE X-RAY DIFFRACTION1.070.138
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HL +1w
  > Sequence: NLR 		NA
/(606)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
22HZYMOUSE FUMARYLACETOACETATE HYDROLASE COMPLEXES WITHX-RAY DIFFRACTION1.350.169
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLHLS
  > Sequence: DWKGT 		NA
/(1201)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LLHLS
  > Sequence: DWKGT 		NA
/(1202)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
112QFPCRYSTAL STRUCTURE OF RED KIDNEY BEAN PURPLE ACID PX-RAY DIFFRACTION2.200.226
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLL +1w
  > Sequence: NHHH 		NA
/(442)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: L +1w
  > Sequence: H 		NA
/(443)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / A   > Structure: LL +1w
  > Sequence: HH 		NA
/(444)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / B   > Structure: HLL +1w
  > Sequence: NHHH 		NA
/(442)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / B   > Structure: L
  > Sequence: H 		NA
/(443)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / B   > Structure: L
  > Sequence: H 		NA
/(444)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
7 / C   > Structure: L
  > Sequence: H 		NA
/(442)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
8 / C   > Structure: HLL
  > Sequence: NHHH 		NA
/(443)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
9 / C   > Structure: L
  > Sequence: H 		NA
/(444)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
10 / D   > Structure: L +1w
  > Sequence: H 		NA
/(442)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
11 / D   > Structure: HLL
  > Sequence: NHH 		NA
/(443)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
11O9ICRYSTAL STRUCTURE OF THE Y42F MUTANT OF MANGANESE X-RAY DIFFRACTION1.330.117
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: +3w
  > Sequence: 		NA
/(400)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
15AK7STRUCTURE OF WT PORPHYROMONAS GINGIVALIS PEPTIDYLAX-RAY DIFFRACTION1.640.130
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SH +2w
  > Sequence: DFD 		NA
/(1483)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
22FWFHIGH RESOLUTION CRYSTAL STRUCTURE OF THE C-TERMINAX-RAY DIFFRACTION1.300.170
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HLL +2w
  > Sequence: HRQ 		NA
/(1101)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / A   > Structure: H +1w
  > Sequence: NQ 		NA
/(1102)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]