There are 5 SFM Motifs: |
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PDB Entry | Title | Determination Method | Resolution | R-Factor |
3ETD | Glutamate dehydrogenase | x-ray | 2.5 | 0.239
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| Motif No. / Chain | Mode | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: HSLLLHSL
> Sequence: KGGMKKAPDRNGVS
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GLU /(550) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | 89-90 S: 1 | 90 | LYS | CG | OE2 | A | 550 | 3.26 | van der Waals | A | 89-90 S: 1 | 90 | LYS | CD | OE2 | A | 550 | 3.89 | van der Waals | A | 89-90 S: 1 | 90 | LYS | CE | OE2 | A | 550 | 3.4 | van der Waals | A | 89-90 S: 1 | 90 | LYS | NZ | CD | A | 550 | 3.58 | H.Bond | A | 89-90 S: 1 | 90 | LYS | NZ | OE1 | A | 550 | 3.97 | H.Bond | A | 89-90 S: 1 | 90 | LYS | NZ | OE2 | A | 550 | 2.65 | H.Bond | A | No SSE | 91 | GLY | N | OE2 | A | 550 | 3.73 | H.Bond | A | No SSE | 91 | GLY | CA | OE2 | A | 550 | 3.99 | van der Waals | A | No SSE | 92 | GLY | N | N | A | 550 | 3.75 | H.Bond | A | No SSE | 92 | GLY | N | CG | A | 550 | 3.46 | H.Bond | A | No SSE | 92 | GLY | CA | N | A | 550 | 3.65 | H.Bond | A | No SSE | 92 | GLY | CA | CG | A | 550 | 3.94 | van der Waals | A | 100-118 H: 1 | 111 | MET | SD | C | A | 550 | 3.35 | van der Waals | A | 100-118 H: 1 | 111 | MET | SD | O | A | 550 | 3.39 | | A | 100-118 H: 1 | 114 | LYS | CE | O | A | 550 | 3.68 | van der Waals | A | 100-118 H: 1 | 114 | LYS | NZ | C | A | 550 | 3.81 | H.Bond | A | 100-118 H: 1 | 114 | LYS | NZ | O | A | 550 | 2.77 | H.Bond | A | 123-129 S: -1 | 126 | LYS | NZ | N | A | 550 | 3.59 | H.Bond | A | 123-129 S: -1 | 126 | LYS | NZ | C | A | 550 | 3.55 | H.Bond | A | No SSE | 166 | ALA | CB | CG | A | 550 | 3.46 | van der Waals | A | No SSE | 166 | ALA | CB | CD | A | 550 | 3.21 | van der Waals | A | No SSE | 166 | ALA | CB | OE1 | A | 550 | 3.51 | van der Waals | A | No SSE | 166 | ALA | CB | OE2 | A | 550 | 3.45 | van der Waals | A | No SSE | 167 | PRO | C | N | A | 550 | 3.81 | H.Bond | A | No SSE | 167 | PRO | O | N | A | 550 | 2.65 | H.Bond | A | No SSE | 167 | PRO | O | CA | A | 550 | 3.79 | van der Waals | A | No SSE | 168 | ASP | CB | N | A | 550 | 3.83 | H.Bond | A | No SSE | 168 | ASP | CG | N | A | 550 | 3.96 | H.Bond | A | No SSE | 168 | ASP | OD1 | N | A | 550 | 3.22 | H.Bond | A | No SSE | 211 | ARG | NH2 | CB | A | 550 | 3.92 | H.Bond | A | No SSE | 211 | ARG | NH2 | OE1 | A | 550 | 3.13 | H.Bond | A | No SSE | 349 | ASN | ND2 | O | A | 550 | 3.76 | H.Bond | A | 375-391 H: 1 | 377 | GLY | C | OE1 | A | 550 | 3.96 | van der Waals | A | 375-391 H: 1 | 377 | GLY | O | OE1 | A | 550 | 3.72 | H.Bond | A | 375-391 H: 1 | 378 | VAL | N | OE1 | A | 550 | 3.92 | H.Bond | A | 375-391 H: 1 | 378 | VAL | CA | OE1 | A | 550 | 3.59 | van der Waals | A | 375-391 H: 1 | 381 | SER | CB | OE1 | A | 550 | 3.23 | van der Waals | A | 375-391 H: 1 | 381 | SER | OG | CD | A | 550 | 3.61 | van der Waals | A | 375-391 H: 1 | 381 | SER | OG | OE1 | A | 550 | 2.61 | H.Bond | |
| 2 / B |
> Structure: HSLLLHSL
> Sequence: KGGMKKAPDRNGVS
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GLU /(550) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | 89-90 S: 1 | 90 | LYS | CG | OE2 | B | 550 | 3.57 | van der Waals | B | 89-90 S: 1 | 90 | LYS | NZ | CD | B | 550 | 3.92 | H.Bond | B | 89-90 S: 1 | 90 | LYS | NZ | OE1 | B | 550 | 3.88 | H.Bond | B | 89-90 S: 1 | 90 | LYS | NZ | OE2 | B | 550 | 3.39 | H.Bond | B | No SSE | 91 | GLY | N | OE2 | B | 550 | 3.47 | H.Bond | B | No SSE | 91 | GLY | CA | OE2 | B | 550 | 3.47 | van der Waals | B | No SSE | 91 | GLY | C | OE2 | B | 550 | 3.72 | van der Waals | B | No SSE | 92 | GLY | N | N | B | 550 | 3.13 | H.Bond | B | No SSE | 92 | GLY | N | CG | B | 550 | 3.75 | H.Bond | B | No SSE | 92 | GLY | N | OE2 | B | 550 | 3.81 | H.Bond | B | No SSE | 92 | GLY | CA | N | B | 550 | 3.52 | H.Bond | B | 100-118 H: 1 | 111 | MET | SD | N | B | 550 | 3.99 | | B | 100-118 H: 1 | 111 | MET | SD | C | B | 550 | 3.55 | van der Waals | B | 100-118 H: 1 | 111 | MET | SD | O | B | 550 | 3.23 | | B | 100-118 H: 1 | 111 | MET | CE | OE2 | B | 550 | 3.55 | van der Waals | B | 100-118 H: 1 | 114 | LYS | CD | O | B | 550 | 3.8 | van der Waals | B | 100-118 H: 1 | 114 | LYS | CE | O | B | 550 | 3.4 | van der Waals | B | 100-118 H: 1 | 114 | LYS | NZ | C | B | 550 | 3.36 | H.Bond | B | 100-118 H: 1 | 114 | LYS | NZ | O | B | 550 | 2.61 | H.Bond | B | 123-129 S: -1 | 126 | LYS | CE | N | B | 550 | 3.73 | H.Bond | B | 123-129 S: -1 | 126 | LYS | NZ | N | B | 550 | 2.57 | H.Bond | B | 123-129 S: -1 | 126 | LYS | NZ | CA | B | 550 | 3.7 | H.Bond | B | 123-129 S: -1 | 126 | LYS | NZ | C | B | 550 | 3.78 | H.Bond | B | No SSE | 166 | ALA | CB | CG | B | 550 | 3.57 | van der Waals | B | No SSE | 166 | ALA | CB | CD | B | 550 | 3.37 | van der Waals | B | No SSE | 166 | ALA | CB | OE1 | B | 550 | 3.56 | van der Waals | B | No SSE | 166 | ALA | CB | OE2 | B | 550 | 3.73 | van der Waals | B | No SSE | 167 | PRO | O | N | B | 550 | 3.86 | H.Bond | B | No SSE | 167 | PRO | O | CG | B | 550 | 3.77 | van der Waals | B | No SSE | 168 | ASP | OD1 | N | B | 550 | 3.51 | H.Bond | B | No SSE | 168 | ASP | OD1 | CA | B | 550 | 3.85 | van der Waals | B | No SSE | 211 | ARG | NH2 | CG | B | 550 | 3.94 | H.Bond | B | No SSE | 211 | ARG | NH2 | OE1 | B | 550 | 3.39 | H.Bond | B | No SSE | 349 | ASN | ND2 | C | B | 550 | 3.54 | H.Bond | B | No SSE | 349 | ASN | ND2 | O | B | 550 | 3.99 | H.Bond | B | 375-391 H: 1 | 377 | GLY | O | OE1 | B | 550 | 3.88 | H.Bond | B | 375-391 H: 1 | 378 | VAL | N | OE1 | B | 550 | 3.93 | H.Bond | B | 375-391 H: 1 | 378 | VAL | CA | OE1 | B | 550 | 3.56 | van der Waals | B | 375-391 H: 1 | 378 | VAL | CG1 | OE1 | B | 550 | 3.98 | van der Waals | B | 375-391 H: 1 | 378 | VAL | CG1 | OE2 | B | 550 | 3.98 | van der Waals | B | 375-391 H: 1 | 378 | VAL | CG2 | O | B | 550 | 3.85 | van der Waals | B | 375-391 H: 1 | 381 | SER | CB | OE1 | B | 550 | 3.27 | van der Waals | B | 375-391 H: 1 | 381 | SER | OG | CD | B | 550 | 3.88 | van der Waals | B | 375-391 H: 1 | 381 | SER | OG | OE1 | B | 550 | 2.71 | H.Bond | |
| 3 / C |
> Structure: HSLLLHSL
> Sequence: KGGMKKAPDRNGVS
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GLU /(550) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | 89-90 S: 1 | 90 | LYS | CG | OE1 | C | 550 | 3.53 | van der Waals | C | 89-90 S: 1 | 90 | LYS | CE | OE1 | C | 550 | 3.78 | van der Waals | C | 89-90 S: 1 | 90 | LYS | NZ | OE1 | C | 550 | 3.05 | H.Bond | C | No SSE | 91 | GLY | N | OE1 | C | 550 | 3.87 | H.Bond | C | No SSE | 92 | GLY | N | N | C | 550 | 3.88 | H.Bond | C | No SSE | 92 | GLY | N | CG | C | 550 | 3.49 | H.Bond | C | No SSE | 92 | GLY | CA | N | C | 550 | 3.91 | H.Bond | C | 100-118 H: 1 | 111 | MET | SD | C | C | 550 | 3.32 | van der Waals | C | 100-118 H: 1 | 111 | MET | SD | O | C | 550 | 3.47 | | C | 100-118 H: 1 | 111 | MET | CE | CG | C | 550 | 3.94 | van der Waals | C | 100-118 H: 1 | 111 | MET | CE | OE1 | C | 550 | 3.98 | van der Waals | C | 100-118 H: 1 | 114 | LYS | CE | O | C | 550 | 3.76 | van der Waals | C | 100-118 H: 1 | 114 | LYS | NZ | C | C | 550 | 3.65 | H.Bond | C | 100-118 H: 1 | 114 | LYS | NZ | O | C | 550 | 2.75 | H.Bond | C | 123-129 S: -1 | 126 | LYS | NZ | N | C | 550 | 2.82 | H.Bond | C | 123-129 S: -1 | 126 | LYS | NZ | CA | C | 550 | 3.95 | H.Bond | C | 123-129 S: -1 | 126 | LYS | NZ | C | C | 550 | 3.97 | H.Bond | C | 123-129 S: -1 | 126 | LYS | NZ | O | C | 550 | 3.94 | H.Bond | C | No SSE | 166 | ALA | CB | CG | C | 550 | 3.99 | van der Waals | C | No SSE | 166 | ALA | CB | CD | C | 550 | 3.46 | van der Waals | C | No SSE | 166 | ALA | CB | OE1 | C | 550 | 3.47 | van der Waals | C | No SSE | 166 | ALA | CB | OE2 | C | 550 | 3.7 | van der Waals | C | No SSE | 167 | PRO | O | N | C | 550 | 3.35 | H.Bond | C | No SSE | 167 | PRO | O | CA | C | 550 | 3.82 | van der Waals | C | No SSE | 167 | PRO | O | CB | C | 550 | 3.45 | van der Waals | C | No SSE | 168 | ASP | CB | N | C | 550 | 3.74 | H.Bond | C | No SSE | 168 | ASP | CG | N | C | 550 | 3.52 | H.Bond | C | No SSE | 168 | ASP | OD1 | N | C | 550 | 2.63 | H.Bond | C | No SSE | 168 | ASP | OD1 | CA | C | 550 | 3.7 | van der Waals | C | No SSE | 211 | ARG | CZ | OE2 | C | 550 | 3.9 | van der Waals | C | No SSE | 211 | ARG | NH2 | CB | C | 550 | 3.76 | H.Bond | C | No SSE | 211 | ARG | NH2 | CD | C | 550 | 3.89 | H.Bond | C | No SSE | 211 | ARG | NH2 | OE2 | C | 550 | 2.84 | H.Bond | C | No SSE | 349 | ASN | ND2 | O | C | 550 | 3.06 | H.Bond | C | 375-391 H: 1 | 377 | GLY | C | OE2 | C | 550 | 3.78 | van der Waals | C | 375-391 H: 1 | 377 | GLY | O | OE2 | C | 550 | 3.69 | H.Bond | C | 375-391 H: 1 | 378 | VAL | N | OE2 | C | 550 | 3.74 | H.Bond | C | 375-391 H: 1 | 378 | VAL | CA | OE2 | C | 550 | 3.61 | van der Waals | C | 375-391 H: 1 | 378 | VAL | CG1 | OE1 | C | 550 | 3.96 | van der Waals | C | 375-391 H: 1 | 381 | SER | CB | OE2 | C | 550 | 3.6 | van der Waals | C | 375-391 H: 1 | 381 | SER | OG | CD | C | 550 | 3.78 | van der Waals | C | 375-391 H: 1 | 381 | SER | OG | OE1 | C | 550 | 3.91 | H.Bond | C | 375-391 H: 1 | 381 | SER | OG | OE2 | C | 550 | 2.87 | H.Bond | |
| 4 / D |
> Structure: HSLLLHSL
> Sequence: KGGMKKAPDRNGVS
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GLU /(550) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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D | 89-90 S: 1 | 90 | LYS | CG | OE1 | D | 550 | 3.02 | van der Waals | D | 89-90 S: 1 | 90 | LYS | CD | OE1 | D | 550 | 3.72 | van der Waals | D | 89-90 S: 1 | 90 | LYS | CE | OE1 | D | 550 | 3.34 | van der Waals | D | 89-90 S: 1 | 90 | LYS | NZ | CD | D | 550 | 3.51 | H.Bond | D | 89-90 S: 1 | 90 | LYS | NZ | OE1 | D | 550 | 2.67 | H.Bond | D | 89-90 S: 1 | 90 | LYS | NZ | OE2 | D | 550 | 3.74 | H.Bond | D | No SSE | 91 | GLY | N | OE1 | D | 550 | 3.43 | H.Bond | D | No SSE | 91 | GLY | CA | OE1 | D | 550 | 3.73 | van der Waals | D | No SSE | 91 | GLY | C | CG | D | 550 | 3.96 | van der Waals | D | No SSE | 92 | GLY | N | N | D | 550 | 3.93 | H.Bond | D | No SSE | 92 | GLY | N | CG | D | 550 | 3.46 | H.Bond | D | No SSE | 92 | GLY | CA | N | D | 550 | 3.99 | H.Bond | D | 100-118 H: 1 | 111 | MET | SD | C | D | 550 | 3.51 | van der Waals | D | 100-118 H: 1 | 111 | MET | SD | O | D | 550 | 3.94 | | D | 100-118 H: 1 | 111 | MET | CE | CG | D | 550 | 3.87 | van der Waals | D | 100-118 H: 1 | 114 | LYS | NZ | C | D | 550 | 3.41 | H.Bond | D | 100-118 H: 1 | 114 | LYS | NZ | O | D | 550 | 3.22 | H.Bond | D | 123-129 S: -1 | 126 | LYS | NZ | N | D | 550 | 3.68 | H.Bond | D | 123-129 S: -1 | 126 | LYS | NZ | O | D | 550 | 3.64 | H.Bond | D | No SSE | 166 | ALA | CB | CG | D | 550 | 3.74 | van der Waals | D | No SSE | 166 | ALA | CB | CD | D | 550 | 3.31 | van der Waals | D | No SSE | 166 | ALA | CB | OE1 | D | 550 | 3.64 | van der Waals | D | No SSE | 166 | ALA | CB | OE2 | D | 550 | 3.38 | van der Waals | D | No SSE | 167 | PRO | O | N | D | 550 | 3.04 | H.Bond | D | No SSE | 168 | ASP | OD1 | N | D | 550 | 3.45 | H.Bond | D | No SSE | 168 | ASP | OD1 | O | D | 550 | 3.95 | H.Bond | D | No SSE | 211 | ARG | NH2 | CB | D | 550 | 3.97 | H.Bond | D | No SSE | 211 | ARG | NH2 | OE2 | D | 550 | 3.31 | H.Bond | D | No SSE | 349 | ASN | ND2 | O | D | 550 | 2.94 | H.Bond | D | 375-391 H: 1 | 377 | GLY | O | OE2 | D | 550 | 3.94 | H.Bond | D | 375-391 H: 1 | 378 | VAL | CA | OE2 | D | 550 | 3.76 | van der Waals | D | 375-391 H: 1 | 378 | VAL | CG2 | CB | D | 550 | 3.92 | van der Waals | D | 375-391 H: 1 | 381 | SER | CB | OE2 | D | 550 | 3.2 | van der Waals | D | 375-391 H: 1 | 381 | SER | OG | CD | D | 550 | 3.71 | van der Waals | D | 375-391 H: 1 | 381 | SER | OG | OE2 | D | 550 | 2.58 | H.Bond | |
| 5 / E |
> Structure: HSLLLHSL
> Sequence: KGGMKKAPDRNGVS
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GLU /(550) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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E | 89-90 S: 1 | 90 | LYS | CG | OE1 | E | 550 | 3.59 | van der Waals | E | 89-90 S: 1 | 90 | LYS | CE | OE1 | E | 550 | 3.74 | van der Waals | E | 89-90 S: 1 | 90 | LYS | NZ | OE1 | E | 550 | 2.96 | H.Bond | E | No SSE | 91 | GLY | N | OE1 | E | 550 | 3.89 | H.Bond | E | No SSE | 92 | GLY | N | N | E | 550 | 2.78 | H.Bond | E | No SSE | 92 | GLY | N | CA | E | 550 | 3.95 | H.Bond | E | No SSE | 92 | GLY | N | CG | E | 550 | 3.39 | H.Bond | E | No SSE | 92 | GLY | CA | N | E | 550 | 2.9 | H.Bond | E | No SSE | 92 | GLY | CA | CG | E | 550 | 3.78 | van der Waals | E | No SSE | 92 | GLY | C | N | E | 550 | 3.87 | H.Bond | E | 100-118 H: 1 | 111 | MET | SD | O | E | 550 | 3.38 | | E | 100-118 H: 1 | 114 | LYS | CE | O | E | 550 | 3.97 | van der Waals | E | 100-118 H: 1 | 114 | LYS | NZ | O | E | 550 | 3.05 | H.Bond | E | 123-129 S: -1 | 126 | LYS | CE | N | E | 550 | 3.68 | H.Bond | E | 123-129 S: -1 | 126 | LYS | NZ | N | E | 550 | 2.53 | H.Bond | E | 123-129 S: -1 | 126 | LYS | NZ | CA | E | 550 | 3.35 | H.Bond | E | 123-129 S: -1 | 126 | LYS | NZ | C | E | 550 | 3.06 | H.Bond | E | 123-129 S: -1 | 126 | LYS | NZ | O | E | 550 | 3.86 | H.Bond | E | No SSE | 166 | ALA | CB | CG | E | 550 | 3.41 | van der Waals | E | No SSE | 166 | ALA | CB | CD | E | 550 | 3.36 | van der Waals | E | No SSE | 166 | ALA | CB | OE1 | E | 550 | 3.32 | van der Waals | E | No SSE | 167 | PRO | O | N | E | 550 | 3.34 | H.Bond | E | No SSE | 167 | PRO | O | CA | E | 550 | 3.53 | van der Waals | E | No SSE | 167 | PRO | O | CG | E | 550 | 3.72 | van der Waals | E | No SSE | 168 | ASP | CB | N | E | 550 | 3.81 | H.Bond | E | No SSE | 168 | ASP | CG | N | E | 550 | 3.84 | H.Bond | E | No SSE | 168 | ASP | OD1 | N | E | 550 | 3.24 | H.Bond | E | No SSE | 168 | ASP | OD1 | CA | E | 550 | 3.41 | van der Waals | E | No SSE | 168 | ASP | OD1 | C | E | 550 | 3.32 | van der Waals | E | No SSE | 211 | ARG | NH2 | CD | E | 550 | 3.99 | H.Bond | E | No SSE | 211 | ARG | NH2 | OE2 | E | 550 | 3.19 | H.Bond | E | No SSE | 349 | ASN | ND2 | C | E | 550 | 3.51 | H.Bond | E | No SSE | 349 | ASN | ND2 | O | E | 550 | 3.37 | H.Bond | E | 375-391 H: 1 | 377 | GLY | C | OE2 | E | 550 | 3.7 | van der Waals | E | 375-391 H: 1 | 377 | GLY | O | OE2 | E | 550 | 3.69 | H.Bond | E | 375-391 H: 1 | 378 | VAL | N | OE2 | E | 550 | 3.52 | H.Bond | E | 375-391 H: 1 | 378 | VAL | CA | OE2 | E | 550 | 3.34 | van der Waals | E | 375-391 H: 1 | 378 | VAL | CB | OE2 | E | 550 | 3.95 | van der Waals | E | 375-391 H: 1 | 378 | VAL | CG1 | OE2 | E | 550 | 3.97 | van der Waals | E | 375-391 H: 1 | 378 | VAL | CG2 | OE2 | E | 550 | 3.99 | van der Waals | E | 375-391 H: 1 | 381 | SER | CB | OE2 | E | 550 | 3.77 | van der Waals | E | 375-391 H: 1 | 381 | SER | OG | CD | E | 550 | 3.81 | van der Waals | E | 375-391 H: 1 | 381 | SER | OG | OE1 | E | 550 | 3.95 | H.Bond | E | 375-391 H: 1 | 381 | SER | OG | OE2 | E | 550 | 3.15 | H.Bond | |