UadSFMs: Urea & Amino Acid Cycles Binding Structural & Functional Motifs - v. β May 2016.
© University Dr Tahar Moulay, Saida.



Project realized by:Mira Raimes and Aicha Bessaih (in their project of MSc in Biology, 2015-2016)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Urea & Amino Acid Cycles Binding Structural & Functional Motifs
- UadSFMs database-
Find UAD SFMs by Enzymes
Find UAD SFMs by PDB entries
3ETD   3MVO   3MVQ   3II0   1JDB   1T36   1A9X   1KEE   1OTH   2NZ2   1J1Z   1K7W   1TJW   3KV2   3LP7   3CEV   
Find UAD SFMs by Ligands
GLU   PLP   NET   PAO   CIR   ASP   AS1   NNH   HAR   ARG   
There are 16 SFM Motifs:
PDB EntryTitleDetermination MethodResolutionR-Factor
3KV2Arginasex-ray1.550.144
Motif No. / ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: LLLLLHHSHL +5w
  > Sequence: DHDNSHGDEDDT
NNH
/(901)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / B   > Structure: LLLLLHHSHL +5w
  > Sequence: DHDNSHGDEDDT
NNH
/(902)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
PDB EntryTitleDetermination MethodResolutionR-Factor
3LP7Arginasex-ray2.040.123
Motif No. / ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HLLLLLHHSHLL +3w
  > Sequence: HDHDNSHGDEDDTE
HAR
/(906)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / B   > Structure: LLLLLHHSHLL +1w
  > Sequence: DHDNSHGDEDDTE
HAR
/(908)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
PDB EntryTitleDetermination MethodResolutionR-Factor
3CEVArginasex-ray2 .400.193
Motif No. / ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HHLL +2w
  > Sequence: HESEL
ARG
/(401)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / B   > Structure: HHLL +2w
  > Sequence: HESEL
ARG
/(402)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / C   > Structure: HHLL +1w
  > Sequence: HESEL
ARG
/(403)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
4 / D   > Structure: HHLLH +2w
  > Sequence: RHESEL
ARG
/(404)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
5 / E   > Structure: HHLLH +2w
  > Sequence: RHESEL
ARG
/(405)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
6 / F   > Structure: HHLL +1w
  > Sequence: RHLESEL
ARG
/(406)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
7 / A   > Structure: LLLLHLHSHLLH +5w
  > Sequence: HHDNPSHGDEDDTE
ARG
/(407)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
8 / B   > Structure: LLLLHLHSHLLH +5w
  > Sequence: HHDNPSHGDEDDTE
ARG
/(408)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
9 / C   > Structure: LLLLHLHSHLLH +4w
  > Sequence: HHDNPSHGDEDDTE
ARG
/(409)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
10 / D   > Structure: LLLLHLHSHLLH +6w
  > Sequence: HHDNSHGDEDDTE
ARG
/(410)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
11 / E   > Structure: LLLLHLHSHLLH +4w
  > Sequence: HHDNPSHGDEDDTE
ARG
/(411)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
12 / F   > Structure: LLLLHLHSHLLH +3w
  > Sequence: HHDNPSHGDEDDTE
ARG
/(412)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]