UadSFMs: Urea & Amino Acid Cycles Binding Structural & Functional Motifs - v. β May 2016.
© University Dr Tahar Moulay, Saida.



Project realized by:Mira Raimes and Aicha Bessaih (in their project of MSc in Biology, 2015-2016)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Urea & Amino Acid Cycles Binding Structural & Functional Motifs
- UadSFMs database-
Find UAD SFMs by Enzymes
Find UAD SFMs by PDB entries
3ETD   3MVO   3MVQ   3II0   1JDB   1T36   1A9X   1KEE   1OTH   2NZ2   1J1Z   1K7W   1TJW   3KV2   3LP7   3CEV   
Find UAD SFMs by Ligands
GLU   PLP   NET   PAO   CIR   ASP   AS1   NNH   HAR   ARG   
Ligand: IDFull NameFormula Chemistry
AS1ARGININOSUCCINATEC10 H18 N4 O6AS1
There are 7 SFM Motifs:
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
41K7WArgininosuccinate lyasex-ray1.960.207
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / C   > Structure: HLHLHHH +3w
  > Sequence: SHRNVAYQK
AS1
/(1001)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / D   > Structure: HHLHHH +5w
  > Sequence: SHRNVYQK
AS1
/(1002)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / B   > Structure: HHLHHH +4w
  > Sequence: SHRNVYQK
AS1
/(1003)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
4 / A   > Structure: HHLHH +6w
  > Sequence: SRNVYQK
AS1
/(1004)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
31TJWArgininosuccinate lyasex-ray2.00.190
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / C   > Structure: HLHLHH +6w
  > Sequence: SSRNVAYQK
AS1
/(1001)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / D   > Structure: HLHLHH +4w
  > Sequence: SSRNAYQK
AS1
/(1002)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / B   > Structure: HLHLHH +6w
  > Sequence: SSRNVAYQK
AS1
/(1003)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]