UadSFMs: Urea & Amino Acid Cycles Binding Structural & Functional Motifs - v. β May 2016.
© University Dr Tahar Moulay, Saida.



Project realized by:Mira Raimes and Aicha Bessaih (in their project of MSc in Biology, 2015-2016)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Urea & Amino Acid Cycles Binding Structural & Functional Motifs
- UadSFMs database-
Find UAD SFMs by Enzymes
Find UAD SFMs by PDB entries
3ETD   3MVO   3MVQ   3II0   1JDB   1T36   1A9X   1KEE   1OTH   2NZ2   1J1Z   1K7W   1TJW   3KV2   3LP7   3CEV   
Find UAD SFMs by Ligands
GLU   PLP   NET   PAO   CIR   ASP   AS1   NNH   HAR   ARG   
Ligand: IDFull NameFormula Chemistry
CIRCITRULLINEC6 H13 N3 O3CIR
There are 4 SFM Motifs:
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
12NZ2Argininosuccinate synthasex-ray2.40.194
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HLSSLSSHLL +2w
  > Sequence: YTSNDRSMDSEEYY
CIR
/(502)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
Nbr of Motifs
per PDB entry
PDB EntryTitleDetermination MethodResolutionR-Factor
31J1ZArgininosuccinate synthasex-ray2.10.226
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)
Show Details
1 / A   > Structure: HSSSSHLL +1w
  > Sequence: YTSNDRSMDSEEYY
CIR
/(520)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / B   > Structure: HSSSSHLL +1w
  > Sequence: YTSNDRSMDSEEYY
CIR
/(2520)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / C   > Structure: HSSSSHLL
  > Sequence: YTSNDRSMDSEEYY
CIR
/(3520)
[+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]