UadSFMs: Urea & Amino Acid Cycles Binding Structural & Functional Motifs - v. β May 2016.
© University Dr Tahar Moulay, Saida.


Project realized by:Mira Raimes and Aicha Bessaih (in their project of MSc in Biology, 2015-2016)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Urea & Amino Acid Cycles Binding Structural & Functional Motifs
- UadSFMs database-
Find UAD SFMs by Enzymes
GLUTAMATE DEHYDROGENASE   
ASPARTATE AMINOTRANSFERASE   
CARBAMOYL PHOSPHATE SYNTHETASE   
ORNITHINE TRANSCARBAMOYLASE   
ARGININOSUCCINATE SYNTHASE   
ARGININOSUCCINATE LYASE   
ARGINASE   
Find UAD SFMs by PDB entries
3ETD   3MVO   3MVQ   3II0   1JDB   1T36   1A9X   1KEE   1OTH   2NZ2   1J1Z   1K7W   1TJW   3KV2   3LP7   3CEV   
Find UAD SFMs by Ligands
GLU   PLP   NET   PAO   CIR   ASP   AS1   NNH   HAR   ARG   
Ligand: IDFull NameFormula Chemistry
NETTETRAETHYLAMMONIUM IONC8 H20 N (1+)NET
There are 15 SFM Motifs:
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
41JDBCarbamoyl phosphate synthetasex-ray2.10.179
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)		Show Details
1 / B   > Structure: LLHL
  > Sequence: VQQTNN 		NET
/(1096)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / E   > Structure: LHL
  > Sequence: QQTNN 		NET
/(1098)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / H   > Structure: LHL
  > Sequence: QTNN 		NET
/(1095)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
4 / K   > Structure: LHL
  > Sequence: QQTNN 		NET
/(1098)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
41T36Carbamoyl phosphate synthetasex-ray2.10.176
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LHL
  > Sequence: QQTNN 		NET
/(1090)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / C   > Structure: LHL
  > Sequence: QQTNN 		NET
/(1092)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / E   > Structure: LHL
  > Sequence: QQTNN 		NET
/(1092)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
4 / G   > Structure: LHL
  > Sequence: QQTNN 		NET
/(1092)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
41A9XCarbamoyl phosphate synthetasex-ray1.80.191
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)		Show Details
1 / G   > Structure: LLHL
  > Sequence: VQQTNN 		NET
/(7950)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / C   > Structure: LHL
  > Sequence: QQTNN 		NET
/(3950)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / E   > Structure: LHL +1w
  > Sequence: QTNN 		NET
/(5950)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
4 / A   > Structure: LHL
  > Sequence: QTNN 		NET
/(1950)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
31KEECarbamoyl phosphate synthetasex-ray2.10.186
Motif No./ChainModeBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LHL
  > Sequence: QQTNN 		NET
/(5012)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
2 / C   > Structure: LHL
  > Sequence: QQTNN 		NET
/(5034)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]
3 / E   > Structure: LHL
  > Sequence: QQTNN 		NET
/(5056)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
  > Graphics rep3: [+]