Finding GlcSFMs for Glucides in the PDB entry '4OIZ' ... |
PDB Entry | Title | Determination Method | Resolution | R-Factor |
4OIZ | Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobact | X-RAY | 3.40 | 0.244
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| 4OIZ has 5 GlcSFMs: |
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| Motif No. / Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / B |
> Structure: LLLSSL
> Sequence: QDNVYASN
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MMA /(201) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 29 | GLN | NE2 | O2 | B | 201 | 3.3 | H.Bond | B | No SSE | 29 | GLN | NE2 | O3 | B | 201 | 3.6 | H.Bond | B | No SSE | 31 | ASP | CG | O2 | B | 201 | 3.66 | van der Waals | B | No SSE | 31 | ASP | OD1 | O2 | B | 201 | 3.98 | H.Bond | B | No SSE | 31 | ASP | OD2 | C2 | B | 201 | 3.64 | van der Waals | B | No SSE | 31 | ASP | OD2 | O2 | B | 201 | 2.63 | H.Bond | B | No SSE | 33 | ASN | ND2 | O5 | B | 201 | 3.44 | H.Bond | B | 34-37 S: -1 | 35 | VAL | CG1 | C6 | B | 201 | 3.79 | van der Waals | B | 34-37 S: -1 | 35 | VAL | CG2 | C6 | B | 201 | 3.96 | van der Waals | B | 34-37 S: -1 | 37 | TYR | CE1 | O4 | B | 201 | 3.61 | van der Waals | B | 34-37 S: -1 | 37 | TYR | CZ | O4 | B | 201 | 3.49 | van der Waals | B | 34-37 S: -1 | 37 | TYR | OH | C4 | B | 201 | 3.19 | van der Waals | B | 34-37 S: -1 | 37 | TYR | OH | O3 | B | 201 | 3.69 | H.Bond | B | 34-37 S: -1 | 37 | TYR | OH | O4 | B | 201 | 2.59 | H.Bond | B | 42-45 S: -1 | 42 | ALA | CB | C6 | B | 201 | 3.75 | van der Waals | B | 42-45 S: -1 | 42 | ALA | CB | O6 | B | 201 | 3.87 | van der Waals | B | 42-45 S: -1 | 45 | SER | CB | O6 | B | 201 | 3.97 | van der Waals | B | 42-45 S: -1 | 45 | SER | OG | O6 | B | 201 | 3.74 | H.Bond | B | No SSE | 49 | ASN | ND2 | C1 | B | 201 | 3.75 | H.Bond | B | No SSE | 49 | ASN | ND2 | C7 | B | 201 | 3.94 | H.Bond | |
| 2 / B |
> Structure: LLLS
> Sequence: QDNY
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MMA /(202) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 59 | GLN | CD | O3 | B | 202 | 3.8 | van der Waals | B | No SSE | 59 | GLN | OE1 | C4 | B | 202 | 3.93 | van der Waals | B | No SSE | 59 | GLN | OE1 | O4 | B | 202 | 3.61 | H.Bond | B | No SSE | 59 | GLN | NE2 | C3 | B | 202 | 3.85 | H.Bond | B | No SSE | 59 | GLN | NE2 | C4 | B | 202 | 3.92 | H.Bond | B | No SSE | 59 | GLN | NE2 | O3 | B | 202 | 2.71 | H.Bond | B | No SSE | 59 | GLN | NE2 | O4 | B | 202 | 3.77 | H.Bond | B | No SSE | 61 | ASP | CG | O3 | B | 202 | 3.64 | van der Waals | B | No SSE | 61 | ASP | OD2 | C3 | B | 202 | 3.93 | van der Waals | B | No SSE | 61 | ASP | OD2 | O3 | B | 202 | 2.58 | H.Bond | B | No SSE | 63 | ASN | CB | O2 | B | 202 | 3.33 | van der Waals | B | No SSE | 63 | ASN | CG | O2 | B | 202 | 3.42 | van der Waals | B | No SSE | 63 | ASN | ND2 | C2 | B | 202 | 3.97 | H.Bond | B | No SSE | 63 | ASN | ND2 | O2 | B | 202 | 2.66 | H.Bond | B | 64-68 S: -1 | 67 | TYR | CZ | O4 | B | 202 | 3.99 | van der Waals | B | 64-68 S: -1 | 67 | TYR | OH | C4 | B | 202 | 3.49 | van der Waals | B | 64-68 S: -1 | 67 | TYR | OH | C6 | B | 202 | 3.64 | van der Waals | B | 64-68 S: -1 | 67 | TYR | OH | O4 | B | 202 | 2.66 | H.Bond | |
| 3 / B |
> Structure: LLLSS
> Sequence: QDNVYPS
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MMA /(203) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 89 | GLN | OE1 | O3 | B | 203 | 3.68 | H.Bond | B | No SSE | 89 | GLN | NE2 | O2 | B | 203 | 2.96 | H.Bond | B | No SSE | 89 | GLN | NE2 | O3 | B | 203 | 3.71 | H.Bond | B | No SSE | 91 | ASP | CG | O2 | B | 203 | 3.65 | van der Waals | B | No SSE | 91 | ASP | OD1 | O2 | B | 203 | 3.94 | H.Bond | B | No SSE | 91 | ASP | OD2 | C2 | B | 203 | 3.62 | van der Waals | B | No SSE | 91 | ASP | OD2 | O2 | B | 203 | 2.63 | H.Bond | B | No SSE | 93 | ASN | CB | O2 | B | 203 | 3.85 | van der Waals | B | No SSE | 93 | ASN | ND2 | C1 | B | 203 | 3.64 | H.Bond | B | No SSE | 93 | ASN | ND2 | C4 | B | 203 | 3.8 | H.Bond | B | No SSE | 93 | ASN | ND2 | C5 | B | 203 | 3.61 | H.Bond | B | No SSE | 93 | ASN | ND2 | C6 | B | 203 | 3.69 | H.Bond | B | No SSE | 93 | ASN | ND2 | O2 | B | 203 | 3.44 | H.Bond | B | No SSE | 93 | ASN | ND2 | O5 | B | 203 | 2.83 | H.Bond | B | 94-97 S: -1 | 95 | VAL | CG1 | O4 | B | 203 | 3.78 | van der Waals | B | 94-97 S: -1 | 95 | VAL | CG2 | C4 | B | 203 | 3.85 | van der Waals | B | 94-97 S: -1 | 97 | TYR | CE1 | O4 | B | 203 | 3.54 | van der Waals | B | 94-97 S: -1 | 97 | TYR | CZ | O3 | B | 203 | 3.78 | van der Waals | B | 94-97 S: -1 | 97 | TYR | CZ | O4 | B | 203 | 3.68 | van der Waals | B | 94-97 S: -1 | 97 | TYR | OH | C3 | B | 203 | 3.61 | van der Waals | B | 94-97 S: -1 | 97 | TYR | OH | C4 | B | 203 | 3.65 | van der Waals | B | 94-97 S: -1 | 97 | TYR | OH | O3 | B | 203 | 2.5 | H.Bond | B | 94-97 S: -1 | 97 | TYR | OH | O4 | B | 203 | 3.24 | H.Bond | B | 102-105 S: 0 | 102 | PRO | CB | O4 | B | 203 | 3.56 | van der Waals | B | 102-105 S: 0 | 102 | PRO | CG | O4 | B | 203 | 3.31 | van der Waals | B | 102-105 S: 0 | 105 | SER | CB | C6 | B | 203 | 3.37 | van der Waals | B | 102-105 S: 0 | 105 | SER | OG | C6 | B | 203 | 3.14 | van der Waals | B | 102-105 S: 0 | 105 | SER | OG | O6 | B | 203 | 3.61 | H.Bond | |
| 4 / C |
> Structure: LLLSSL
> Sequence: QDNYASN
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MMA /(201) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 29 | GLN | CD | O3 | C | 201 | 3.75 | van der Waals | C | No SSE | 29 | GLN | OE1 | O3 | C | 201 | 3.79 | H.Bond | C | No SSE | 29 | GLN | NE2 | C3 | C | 201 | 3.99 | H.Bond | C | No SSE | 29 | GLN | NE2 | O2 | C | 201 | 3.6 | H.Bond | C | No SSE | 29 | GLN | NE2 | O3 | C | 201 | 2.88 | H.Bond | C | No SSE | 31 | ASP | CG | O2 | C | 201 | 3.89 | van der Waals | C | No SSE | 31 | ASP | OD2 | C2 | C | 201 | 3.6 | van der Waals | C | No SSE | 31 | ASP | OD2 | O2 | C | 201 | 3.06 | H.Bond | C | No SSE | 31 | ASP | OD2 | O3 | C | 201 | 3.52 | H.Bond | C | No SSE | 33 | ASN | CB | O2 | C | 201 | 3.35 | van der Waals | C | No SSE | 33 | ASN | CG | O2 | C | 201 | 3.66 | van der Waals | C | No SSE | 33 | ASN | ND2 | C1 | C | 201 | 3.86 | H.Bond | C | No SSE | 33 | ASN | ND2 | O2 | C | 201 | 3.07 | H.Bond | C | No SSE | 33 | ASN | ND2 | O5 | C | 201 | 3.58 | H.Bond | C | 34-38 S: -1 | 37 | TYR | CE1 | O4 | C | 201 | 3.74 | van der Waals | C | 34-38 S: -1 | 37 | TYR | CZ | O4 | C | 201 | 3.4 | van der Waals | C | 34-38 S: -1 | 37 | TYR | OH | C4 | C | 201 | 3.59 | van der Waals | C | 34-38 S: -1 | 37 | TYR | OH | O3 | C | 201 | 3.55 | H.Bond | C | 34-38 S: -1 | 37 | TYR | OH | O4 | C | 201 | 2.59 | H.Bond | C | 41-45 S: -1 | 42 | ALA | CB | C6 | C | 201 | 3.64 | van der Waals | C | 41-45 S: -1 | 45 | SER | OG | O6 | C | 201 | 3.98 | H.Bond | C | No SSE | 49 | ASN | CB | O2 | C | 201 | 3.72 | van der Waals | C | No SSE | 49 | ASN | ND2 | C7 | C | 201 | 3.82 | H.Bond | |
| 5 / C |
> Structure: LLLSS
> Sequence: QDNYP
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MMA /(202) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 89 | GLN | CD | O3 | C | 202 | 3.74 | van der Waals | C | No SSE | 89 | GLN | OE1 | O4 | C | 202 | 3.63 | H.Bond | C | No SSE | 89 | GLN | NE2 | C3 | C | 202 | 3.83 | H.Bond | C | No SSE | 89 | GLN | NE2 | O3 | C | 202 | 2.6 | H.Bond | C | No SSE | 89 | GLN | NE2 | O4 | C | 202 | 3.89 | H.Bond | C | No SSE | 91 | ASP | CG | O3 | C | 202 | 3.39 | van der Waals | C | No SSE | 91 | ASP | OD1 | O3 | C | 202 | 3.46 | H.Bond | C | No SSE | 91 | ASP | OD2 | C2 | C | 202 | 3.55 | van der Waals | C | No SSE | 91 | ASP | OD2 | C3 | C | 202 | 3.7 | van der Waals | C | No SSE | 91 | ASP | OD2 | O2 | C | 202 | 2.97 | H.Bond | C | No SSE | 91 | ASP | OD2 | O3 | C | 202 | 2.7 | H.Bond | C | No SSE | 93 | ASN | CB | O2 | C | 202 | 3.73 | van der Waals | C | No SSE | 93 | ASN | CG | O2 | C | 202 | 3.61 | van der Waals | C | No SSE | 93 | ASN | ND2 | C4 | C | 202 | 3.87 | H.Bond | C | No SSE | 93 | ASN | ND2 | O2 | C | 202 | 3.03 | H.Bond | C | No SSE | 93 | ASN | ND2 | O5 | C | 202 | 3.83 | H.Bond | C | 94-98 S: -1 | 97 | TYR | CZ | O4 | C | 202 | 3.61 | van der Waals | C | 94-98 S: -1 | 97 | TYR | OH | C4 | C | 202 | 3.64 | van der Waals | C | 94-98 S: -1 | 97 | TYR | OH | O4 | C | 202 | 2.43 | H.Bond | C | 101-105 S: 0 | 102 | PRO | CB | O6 | C | 202 | 3.86 | van der Waals | C | 101-105 S: 0 | 102 | PRO | CG | O6 | C | 202 | 3.96 | van der Waals | |