There are 11 GlcSFMs: |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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2 | 1LOG | X-RAY STRUCTURE OF A (ALPHA-MAN(1-3)BETA-MAN(1-4)GLCNAC)-LECTIN COMPLEX AT 2.1 ANGSTROMS RESOLUTION | X-RAY | 2.10 | 0.175
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / C |
> Structure: LLHLL
+6w
> Sequence: ADGGFN
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MAN /(581) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 80 | ALA | CB | C6 | C | 581 | 3.64 | van der Waals | C | No SSE | 80 | ALA | CB | O6 | C | 581 | 3.23 | van der Waals | C | No SSE | 81 | ASP | CG | C4 | C | 581 | 3.95 | van der Waals | C | No SSE | 81 | ASP | CG | O4 | C | 581 | 3.42 | van der Waals | C | No SSE | 81 | ASP | CG | O6 | C | 581 | 3.77 | van der Waals | C | No SSE | 81 | ASP | OD1 | C4 | C | 581 | 3.71 | van der Waals | C | No SSE | 81 | ASP | OD1 | C6 | C | 581 | 3.96 | van der Waals | C | No SSE | 81 | ASP | OD1 | O4 | C | 581 | 2.79 | H.Bond | C | No SSE | 81 | ASP | OD2 | C4 | C | 581 | 3.46 | van der Waals | C | No SSE | 81 | ASP | OD2 | C6 | C | 581 | 3.6 | van der Waals | C | No SSE | 81 | ASP | OD2 | O4 | C | 581 | 3.4 | H.Bond | C | No SSE | 81 | ASP | OD2 | O6 | C | 581 | 2.93 | H.Bond | C | 97-101 H: 5 | 98 | GLY | CA | O2 | C | 581 | 3.92 | van der Waals | C | 97-101 H: 5 | 98 | GLY | CA | O3 | C | 581 | 3.34 | van der Waals | C | 97-101 H: 5 | 98 | GLY | C | O3 | C | 581 | 3.61 | van der Waals | C | 97-101 H: 5 | 98 | GLY | C | O4 | C | 581 | 3.99 | van der Waals | C | 97-101 H: 5 | 99 | GLY | N | C3 | C | 581 | 3.98 | H.Bond | C | 97-101 H: 5 | 99 | GLY | N | C4 | C | 581 | 3.83 | H.Bond | C | 97-101 H: 5 | 99 | GLY | N | O3 | C | 581 | 2.94 | H.Bond | C | 97-101 H: 5 | 99 | GLY | N | O4 | C | 581 | 3.3 | H.Bond | C | 97-101 H: 5 | 99 | GLY | CA | O3 | C | 581 | 3.92 | van der Waals | C | 97-101 H: 5 | 99 | GLY | CA | O4 | C | 581 | 3.53 | van der Waals | C | No SSE | 123 | PHE | CG | C6 | C | 581 | 3.78 | van der Waals | C | No SSE | 123 | PHE | CD1 | C6 | C | 581 | 3.8 | van der Waals | C | No SSE | 123 | PHE | CD1 | O4 | C | 581 | 3.77 | van der Waals | C | No SSE | 123 | PHE | CD2 | C6 | C | 581 | 3.64 | van der Waals | C | No SSE | 123 | PHE | CE1 | C5 | C | 581 | 3.9 | van der Waals | C | No SSE | 123 | PHE | CE1 | C6 | C | 581 | 3.72 | van der Waals | C | No SSE | 123 | PHE | CE1 | O4 | C | 581 | 3.93 | van der Waals | C | No SSE | 123 | PHE | CE2 | C6 | C | 581 | 3.55 | van der Waals | C | No SSE | 123 | PHE | CZ | C5 | C | 581 | 3.97 | van der Waals | C | No SSE | 123 | PHE | CZ | C6 | C | 581 | 3.6 | van der Waals | C | No SSE | 125 | ASN | CG | O4 | C | 581 | 3.92 | van der Waals | C | No SSE | 125 | ASN | ND2 | O4 | C | 581 | 2.81 | H.Bond | C | Water | 877 | HOH | O | C3 | C | 581 | 3.67 | van der Waals | C | Water | 877 | HOH | O | O3 | C | 581 | 2.83 | H.Bond | C | Water | 908 | HOH | O | C3 | C | 581 | 3.83 | van der Waals | C | Water | 909 | HOH | O | C2 | C | 581 | 3.56 | van der Waals | C | Water | 909 | HOH | O | O2 | C | 581 | 2.86 | H.Bond | C | Water | 909 | HOH | O | O3 | C | 581 | 3.35 | H.Bond | C | Water | 910 | HOH | O | O2 | C | 581 | 3.51 | H.Bond | C | Water | 914 | HOH | O | C1 | C | 581 | 3.93 | van der Waals | C | Water | 914 | HOH | O | C2 | C | 581 | 3.62 | van der Waals | C | Water | 915 | HOH | O | C1 | C | 581 | 3.25 | van der Waals | C | Water | 915 | HOH | O | C2 | C | 581 | 3.33 | van der Waals | C | Water | 915 | HOH | O | O2 | C | 581 | 2.78 | H.Bond | C | Water | 915 | HOH | O | O5 | C | 581 | 3.88 | H.Bond | |
| 2 / A |
> Structure: LLHLL
+2w
> Sequence: ADGGFN
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MAN /(591) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 80 | ALA | CB | C6 | A | 591 | 3.88 | van der Waals | A | No SSE | 80 | ALA | CB | O6 | A | 591 | 3.35 | van der Waals | A | No SSE | 81 | ASP | CG | C4 | A | 591 | 3.93 | van der Waals | A | No SSE | 81 | ASP | CG | O4 | A | 591 | 3.51 | van der Waals | A | No SSE | 81 | ASP | CG | O6 | A | 591 | 3.65 | van der Waals | A | No SSE | 81 | ASP | OD1 | C4 | A | 591 | 3.57 | van der Waals | A | No SSE | 81 | ASP | OD1 | C6 | A | 591 | 3.73 | van der Waals | A | No SSE | 81 | ASP | OD1 | O4 | A | 591 | 2.77 | H.Bond | A | No SSE | 81 | ASP | OD1 | O6 | A | 591 | 3.81 | H.Bond | A | No SSE | 81 | ASP | OD2 | C4 | A | 591 | 3.51 | van der Waals | A | No SSE | 81 | ASP | OD2 | C6 | A | 591 | 3.61 | van der Waals | A | No SSE | 81 | ASP | OD2 | O4 | A | 591 | 3.55 | H.Bond | A | No SSE | 81 | ASP | OD2 | O6 | A | 591 | 2.91 | H.Bond | A | 97-101 H: 5 | 98 | GLY | CA | C4 | A | 591 | 3.97 | van der Waals | A | 97-101 H: 5 | 98 | GLY | CA | O2 | A | 591 | 3.6 | van der Waals | A | 97-101 H: 5 | 98 | GLY | CA | O3 | A | 591 | 3.36 | van der Waals | A | 97-101 H: 5 | 98 | GLY | C | O3 | A | 591 | 3.42 | van der Waals | A | 97-101 H: 5 | 98 | GLY | C | O4 | A | 591 | 3.9 | van der Waals | A | 97-101 H: 5 | 99 | GLY | N | C3 | A | 591 | 3.59 | H.Bond | A | 97-101 H: 5 | 99 | GLY | N | C4 | A | 591 | 3.37 | H.Bond | A | 97-101 H: 5 | 99 | GLY | N | O3 | A | 591 | 2.65 | H.Bond | A | 97-101 H: 5 | 99 | GLY | N | O4 | A | 591 | 2.95 | H.Bond | A | 97-101 H: 5 | 99 | GLY | CA | O3 | A | 591 | 3.58 | van der Waals | A | 97-101 H: 5 | 99 | GLY | CA | O4 | A | 591 | 3.31 | van der Waals | A | No SSE | 123 | PHE | CG | C6 | A | 591 | 3.77 | van der Waals | A | No SSE | 123 | PHE | CD1 | C6 | A | 591 | 3.82 | van der Waals | A | No SSE | 123 | PHE | CD2 | C6 | A | 591 | 3.6 | van der Waals | A | No SSE | 123 | PHE | CD2 | O4 | A | 591 | 3.49 | van der Waals | A | No SSE | 123 | PHE | CE1 | C6 | A | 591 | 3.72 | van der Waals | A | No SSE | 123 | PHE | CE2 | C5 | A | 591 | 3.72 | van der Waals | A | No SSE | 123 | PHE | CE2 | C6 | A | 591 | 3.49 | van der Waals | A | No SSE | 123 | PHE | CE2 | O4 | A | 591 | 3.66 | van der Waals | A | No SSE | 123 | PHE | CZ | C6 | A | 591 | 3.57 | van der Waals | A | No SSE | 125 | ASN | CG | O4 | A | 591 | 3.82 | van der Waals | A | No SSE | 125 | ASN | ND2 | C4 | A | 591 | 3.96 | H.Bond | A | No SSE | 125 | ASN | ND2 | O4 | A | 591 | 2.78 | H.Bond | A | Water | 711 | HOH | O | O2 | A | 591 | 3.99 | H.Bond | A | Water | 801 | HOH | O | C3 | A | 591 | 3.78 | van der Waals | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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4 | 1QDO | MAN(APLHA1-3)MAN(ALPHA1-O)METHYL CONCANAVALIN A COMPLEX | X-RAY | 2.80 | 0.164
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLLLLLLH
> Sequence: YNGLYADGR
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MAN /(238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 12 | TYR | CD1 | O4 | A | 238 | 3.86 | van der Waals | A | No SSE | 14 | ASN | CG | O4 | A | 238 | 3.88 | van der Waals | A | No SSE | 14 | ASN | OD1 | O4 | A | 238 | 3.11 | H.Bond | A | No SSE | 14 | ASN | ND2 | O4 | A | 238 | 3.86 | H.Bond | A | No SSE | 98 | GLY | N | O6 | A | 238 | 3.43 | H.Bond | A | No SSE | 98 | GLY | CA | O2 | A | 238 | 3.47 | van der Waals | A | No SSE | 98 | GLY | CA | O6 | A | 238 | 3.38 | van der Waals | A | No SSE | 98 | GLY | C | O6 | A | 238 | 3.44 | van der Waals | A | No SSE | 99 | LEU | N | C1 | A | 238 | 3.97 | H.Bond | A | No SSE | 99 | LEU | N | C5 | A | 238 | 3.93 | H.Bond | A | No SSE | 99 | LEU | N | C6 | A | 238 | 3.77 | H.Bond | A | No SSE | 99 | LEU | N | O2 | A | 238 | 3.67 | H.Bond | A | No SSE | 99 | LEU | N | O5 | A | 238 | 3.1 | H.Bond | A | No SSE | 99 | LEU | N | O6 | A | 238 | 3.01 | H.Bond | A | No SSE | 99 | LEU | CA | O5 | A | 238 | 3.71 | van der Waals | A | No SSE | 99 | LEU | CA | O6 | A | 238 | 3.87 | van der Waals | A | No SSE | 99 | LEU | C | O6 | A | 238 | 3.85 | van der Waals | A | No SSE | 99 | LEU | CB | C1 | A | 238 | 3.84 | van der Waals | A | No SSE | 99 | LEU | CB | O5 | A | 238 | 3.13 | van der Waals | A | No SSE | 100 | TYR | N | C6 | A | 238 | 3.62 | H.Bond | A | No SSE | 100 | TYR | N | O6 | A | 238 | 2.89 | H.Bond | A | No SSE | 100 | TYR | CA | O6 | A | 238 | 3.65 | van der Waals | A | No SSE | 100 | TYR | C | O6 | A | 238 | 3.9 | van der Waals | A | No SSE | 100 | TYR | O | O6 | A | 238 | 3.35 | H.Bond | A | No SSE | 100 | TYR | CB | O6 | A | 238 | 3.71 | van der Waals | A | No SSE | 100 | TYR | CD2 | C6 | A | 238 | 3.96 | van der Waals | A | No SSE | 207 | ALA | CB | C6 | A | 238 | 3.92 | van der Waals | A | No SSE | 207 | ALA | CB | O6 | A | 238 | 3.49 | van der Waals | A | No SSE | 208 | ASP | CG | C4 | A | 238 | 3.88 | van der Waals | A | No SSE | 208 | ASP | CG | O4 | A | 238 | 3.31 | van der Waals | A | No SSE | 208 | ASP | CG | O6 | A | 238 | 3.86 | van der Waals | A | No SSE | 208 | ASP | OD1 | C4 | A | 238 | 3.45 | van der Waals | A | No SSE | 208 | ASP | OD1 | C6 | A | 238 | 3.48 | van der Waals | A | No SSE | 208 | ASP | OD1 | O4 | A | 238 | 3.28 | H.Bond | A | No SSE | 208 | ASP | OD1 | O6 | A | 238 | 2.71 | H.Bond | A | No SSE | 208 | ASP | OD2 | C4 | A | 238 | 3.52 | van der Waals | A | No SSE | 208 | ASP | OD2 | O4 | A | 238 | 2.6 | H.Bond | A | 227-229 H: 5 | 227 | GLY | CA | O3 | A | 238 | 3.43 | van der Waals | A | 227-229 H: 5 | 227 | GLY | C | O3 | A | 238 | 3.52 | van der Waals | A | 227-229 H: 5 | 228 | ARG | N | C3 | A | 238 | 3.76 | H.Bond | A | 227-229 H: 5 | 228 | ARG | N | C4 | A | 238 | 3.8 | H.Bond | A | 227-229 H: 5 | 228 | ARG | N | O3 | A | 238 | 2.66 | H.Bond | A | 227-229 H: 5 | 228 | ARG | N | O4 | A | 238 | 3.41 | H.Bond | A | 227-229 H: 5 | 228 | ARG | CA | O3 | A | 238 | 3.54 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CA | O4 | A | 238 | 3.83 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CB | O3 | A | 238 | 3.25 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CB | O4 | A | 238 | 3.68 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CG | O3 | A | 238 | 3.34 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CD | O3 | A | 238 | 3.65 | van der Waals | |
| 2 / B |
> Structure: LLLLLLH
> Sequence: NGLYADGR
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MAN /(1238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 14 | ASN | CG | O4 | B | 1238 | 3.72 | van der Waals | B | No SSE | 14 | ASN | OD1 | O4 | B | 1238 | 3.03 | H.Bond | B | No SSE | 14 | ASN | ND2 | O4 | B | 1238 | 3.71 | H.Bond | B | No SSE | 98 | GLY | N | O6 | B | 1238 | 3.41 | H.Bond | B | No SSE | 98 | GLY | CA | O2 | B | 1238 | 3.89 | van der Waals | B | No SSE | 98 | GLY | CA | O6 | B | 1238 | 3.09 | van der Waals | B | No SSE | 98 | GLY | C | O6 | B | 1238 | 3.26 | van der Waals | B | No SSE | 99 | LEU | N | C5 | B | 1238 | 3.95 | H.Bond | B | No SSE | 99 | LEU | N | C6 | B | 1238 | 3.78 | H.Bond | B | No SSE | 99 | LEU | N | O2 | B | 1238 | 3.78 | H.Bond | B | No SSE | 99 | LEU | N | O5 | B | 1238 | 3.12 | H.Bond | B | No SSE | 99 | LEU | N | O6 | B | 1238 | 2.88 | H.Bond | B | No SSE | 99 | LEU | CA | O5 | B | 1238 | 3.81 | van der Waals | B | No SSE | 99 | LEU | CA | O6 | B | 1238 | 3.9 | van der Waals | B | No SSE | 99 | LEU | C | O6 | B | 1238 | 3.96 | van der Waals | B | No SSE | 99 | LEU | CB | C1 | B | 1238 | 3.94 | van der Waals | B | No SSE | 99 | LEU | CB | O5 | B | 1238 | 3.34 | van der Waals | B | No SSE | 100 | TYR | N | C6 | B | 1238 | 3.88 | H.Bond | B | No SSE | 100 | TYR | N | O6 | B | 1238 | 3 | H.Bond | B | No SSE | 100 | TYR | CA | O6 | B | 1238 | 3.72 | van der Waals | B | No SSE | 100 | TYR | C | O6 | B | 1238 | 3.94 | van der Waals | B | No SSE | 100 | TYR | O | O6 | B | 1238 | 3.38 | H.Bond | B | No SSE | 100 | TYR | CB | O6 | B | 1238 | 3.68 | van der Waals | B | No SSE | 207 | ALA | CB | C6 | B | 1238 | 3.86 | van der Waals | B | No SSE | 207 | ALA | CB | O6 | B | 1238 | 3.6 | van der Waals | B | No SSE | 208 | ASP | CG | O4 | B | 1238 | 3.51 | van der Waals | B | No SSE | 208 | ASP | CG | O6 | B | 1238 | 3.87 | van der Waals | B | No SSE | 208 | ASP | OD1 | C4 | B | 1238 | 3.77 | van der Waals | B | No SSE | 208 | ASP | OD1 | C6 | B | 1238 | 3.36 | van der Waals | B | No SSE | 208 | ASP | OD1 | O4 | B | 1238 | 3.6 | H.Bond | B | No SSE | 208 | ASP | OD1 | O6 | B | 1238 | 2.8 | H.Bond | B | No SSE | 208 | ASP | OD2 | C4 | B | 1238 | 3.71 | van der Waals | B | No SSE | 208 | ASP | OD2 | O4 | B | 1238 | 2.73 | H.Bond | B | 227-229 H: 5 | 227 | GLY | CA | C4 | B | 1238 | 3.8 | van der Waals | B | 227-229 H: 5 | 227 | GLY | CA | O3 | B | 1238 | 3.54 | van der Waals | B | 227-229 H: 5 | 227 | GLY | CA | O4 | B | 1238 | 3.95 | van der Waals | B | 227-229 H: 5 | 227 | GLY | C | O3 | B | 1238 | 3.9 | van der Waals | B | 227-229 H: 5 | 227 | GLY | C | O4 | B | 1238 | 3.8 | van der Waals | B | 227-229 H: 5 | 228 | ARG | N | C3 | B | 1238 | 3.99 | H.Bond | B | 227-229 H: 5 | 228 | ARG | N | C4 | B | 1238 | 3.67 | H.Bond | B | 227-229 H: 5 | 228 | ARG | N | O3 | B | 1238 | 3.23 | H.Bond | B | 227-229 H: 5 | 228 | ARG | N | O4 | B | 1238 | 3.02 | H.Bond | B | 227-229 H: 5 | 228 | ARG | CA | O4 | B | 1238 | 3.62 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CB | O3 | B | 1238 | 3.99 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CB | O4 | B | 1238 | 3.68 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CG | C3 | B | 1238 | 3.27 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CG | C4 | B | 1238 | 3.63 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CG | O3 | B | 1238 | 2.86 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CG | O4 | B | 1238 | 2.84 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CD | C3 | B | 1238 | 3.48 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CD | O3 | B | 1238 | 2.82 | van der Waals | |
| 3 / C |
> Structure: LLLLLLLH
> Sequence: YNGLYADGR
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MAN /(2238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 12 | TYR | CD2 | C6 | C | 2238 | 3.89 | van der Waals | C | No SSE | 12 | TYR | CE2 | C6 | C | 2238 | 3.93 | van der Waals | C | No SSE | 14 | ASN | CG | O4 | C | 2238 | 3.88 | van der Waals | C | No SSE | 14 | ASN | OD1 | O4 | C | 2238 | 3.31 | H.Bond | C | No SSE | 14 | ASN | ND2 | O4 | C | 2238 | 3.63 | H.Bond | C | No SSE | 98 | GLY | N | O6 | C | 2238 | 3.58 | H.Bond | C | No SSE | 98 | GLY | CA | O2 | C | 2238 | 3.68 | van der Waals | C | No SSE | 98 | GLY | CA | O6 | C | 2238 | 3.47 | van der Waals | C | No SSE | 98 | GLY | C | O6 | C | 2238 | 3.48 | van der Waals | C | No SSE | 99 | LEU | N | C6 | C | 2238 | 3.98 | H.Bond | C | No SSE | 99 | LEU | N | O2 | C | 2238 | 3.86 | H.Bond | C | No SSE | 99 | LEU | N | O5 | C | 2238 | 3.27 | H.Bond | C | No SSE | 99 | LEU | N | O6 | C | 2238 | 3.15 | H.Bond | C | No SSE | 99 | LEU | CA | O5 | C | 2238 | 3.9 | van der Waals | C | No SSE | 99 | LEU | CA | O6 | C | 2238 | 3.99 | van der Waals | C | No SSE | 99 | LEU | CB | O5 | C | 2238 | 3.33 | van der Waals | C | No SSE | 100 | TYR | N | O6 | C | 2238 | 3.18 | H.Bond | C | No SSE | 100 | TYR | CA | O6 | C | 2238 | 3.98 | van der Waals | C | No SSE | 100 | TYR | O | O6 | C | 2238 | 3.63 | H.Bond | C | No SSE | 207 | ALA | CB | O6 | C | 2238 | 3.67 | van der Waals | C | No SSE | 208 | ASP | CG | C4 | C | 2238 | 3.99 | van der Waals | C | No SSE | 208 | ASP | CG | O4 | C | 2238 | 3.3 | van der Waals | C | No SSE | 208 | ASP | CG | O6 | C | 2238 | 3.91 | van der Waals | C | No SSE | 208 | ASP | OD1 | C4 | C | 2238 | 3.44 | van der Waals | C | No SSE | 208 | ASP | OD1 | C6 | C | 2238 | 3.44 | van der Waals | C | No SSE | 208 | ASP | OD1 | O4 | C | 2238 | 3.17 | H.Bond | C | No SSE | 208 | ASP | OD1 | O6 | C | 2238 | 2.77 | H.Bond | C | No SSE | 208 | ASP | OD2 | C4 | C | 2238 | 3.73 | van der Waals | C | No SSE | 208 | ASP | OD2 | O4 | C | 2238 | 2.68 | H.Bond | C | 227-229 H: 5 | 227 | GLY | CA | C4 | C | 2238 | 3.97 | van der Waals | C | 227-229 H: 5 | 227 | GLY | CA | O3 | C | 2238 | 3.55 | van der Waals | C | 227-229 H: 5 | 227 | GLY | C | O3 | C | 2238 | 3.63 | van der Waals | C | 227-229 H: 5 | 227 | GLY | C | O4 | C | 2238 | 3.9 | van der Waals | C | 227-229 H: 5 | 228 | ARG | N | C3 | C | 2238 | 3.69 | H.Bond | C | 227-229 H: 5 | 228 | ARG | N | C4 | C | 2238 | 3.55 | H.Bond | C | 227-229 H: 5 | 228 | ARG | N | O3 | C | 2238 | 2.75 | H.Bond | C | 227-229 H: 5 | 228 | ARG | N | O4 | C | 2238 | 3.06 | H.Bond | C | 227-229 H: 5 | 228 | ARG | CA | O3 | C | 2238 | 3.59 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CA | O4 | C | 2238 | 3.47 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CB | O3 | C | 2238 | 3.23 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CB | O4 | C | 2238 | 3.38 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CG | O3 | C | 2238 | 3.05 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CD | O3 | C | 2238 | 3.46 | van der Waals | |
| 4 / D |
> Structure: LLLLLLLH
> Sequence: YNGLYADGR
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MAN /(3238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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D | No SSE | 12 | TYR | CG | C6 | D | 3238 | 3.96 | van der Waals | D | No SSE | 12 | TYR | CD1 | C6 | D | 3238 | 3.78 | van der Waals | D | No SSE | 12 | TYR | CD1 | O4 | D | 3238 | 3.77 | van der Waals | D | No SSE | 12 | TYR | CE1 | C6 | D | 3238 | 3.95 | van der Waals | D | No SSE | 14 | ASN | CG | O4 | D | 3238 | 3.63 | van der Waals | D | No SSE | 14 | ASN | OD1 | O4 | D | 3238 | 2.81 | H.Bond | D | No SSE | 14 | ASN | ND2 | C3 | D | 3238 | 3.95 | H.Bond | D | No SSE | 14 | ASN | ND2 | O4 | D | 3238 | 3.71 | H.Bond | D | No SSE | 98 | GLY | N | O6 | D | 3238 | 3.72 | H.Bond | D | No SSE | 98 | GLY | CA | O2 | D | 3238 | 3.71 | van der Waals | D | No SSE | 98 | GLY | CA | O6 | D | 3238 | 3.56 | van der Waals | D | No SSE | 98 | GLY | C | O6 | D | 3238 | 3.59 | van der Waals | D | No SSE | 99 | LEU | N | O2 | D | 3238 | 3.89 | H.Bond | D | No SSE | 99 | LEU | N | O5 | D | 3238 | 3.24 | H.Bond | D | No SSE | 99 | LEU | N | O6 | D | 3238 | 3.2 | H.Bond | D | No SSE | 99 | LEU | CA | O5 | D | 3238 | 3.96 | van der Waals | D | No SSE | 99 | LEU | C | O6 | D | 3238 | 3.88 | van der Waals | D | No SSE | 99 | LEU | CB | O5 | D | 3238 | 3.54 | van der Waals | D | No SSE | 100 | TYR | N | C6 | D | 3238 | 3.91 | H.Bond | D | No SSE | 100 | TYR | N | O6 | D | 3238 | 2.82 | H.Bond | D | No SSE | 100 | TYR | CA | O6 | D | 3238 | 3.43 | van der Waals | D | No SSE | 100 | TYR | C | O6 | D | 3238 | 3.81 | van der Waals | D | No SSE | 100 | TYR | O | O6 | D | 3238 | 3.43 | H.Bond | D | No SSE | 100 | TYR | CB | C6 | D | 3238 | 3.88 | van der Waals | D | No SSE | 100 | TYR | CB | O6 | D | 3238 | 3.24 | van der Waals | D | No SSE | 100 | TYR | CG | O6 | D | 3238 | 3.98 | van der Waals | D | No SSE | 100 | TYR | CD2 | C6 | D | 3238 | 3.66 | van der Waals | D | No SSE | 100 | TYR | CD2 | O6 | D | 3238 | 3.89 | van der Waals | D | No SSE | 207 | ALA | CB | C6 | D | 3238 | 3.61 | van der Waals | D | No SSE | 207 | ALA | CB | O6 | D | 3238 | 3.22 | van der Waals | D | No SSE | 208 | ASP | CG | C4 | D | 3238 | 3.87 | van der Waals | D | No SSE | 208 | ASP | CG | O4 | D | 3238 | 3.27 | van der Waals | D | No SSE | 208 | ASP | OD1 | C4 | D | 3238 | 3.47 | van der Waals | D | No SSE | 208 | ASP | OD1 | C6 | D | 3238 | 3.55 | van der Waals | D | No SSE | 208 | ASP | OD1 | O4 | D | 3238 | 3.3 | H.Bond | D | No SSE | 208 | ASP | OD1 | O6 | D | 3238 | 3.06 | H.Bond | D | No SSE | 208 | ASP | OD2 | C4 | D | 3238 | 3.47 | van der Waals | D | No SSE | 208 | ASP | OD2 | O4 | D | 3238 | 2.5 | H.Bond | D | 227-229 H: 5 | 227 | GLY | CA | C4 | D | 3238 | 3.98 | van der Waals | D | 227-229 H: 5 | 227 | GLY | CA | O2 | D | 3238 | 3.96 | van der Waals | D | 227-229 H: 5 | 227 | GLY | CA | O3 | D | 3238 | 3.58 | van der Waals | D | 227-229 H: 5 | 227 | GLY | C | O3 | D | 3238 | 3.54 | van der Waals | D | 227-229 H: 5 | 228 | ARG | N | C3 | D | 3238 | 3.63 | H.Bond | D | 227-229 H: 5 | 228 | ARG | N | C4 | D | 3238 | 3.55 | H.Bond | D | 227-229 H: 5 | 228 | ARG | N | O3 | D | 3238 | 2.61 | H.Bond | D | 227-229 H: 5 | 228 | ARG | N | O4 | D | 3238 | 3.18 | H.Bond | D | 227-229 H: 5 | 228 | ARG | CA | O3 | D | 3238 | 3.41 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CA | O4 | D | 3238 | 3.58 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CB | C3 | D | 3238 | 3.93 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CB | O3 | D | 3238 | 3.04 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CB | O4 | D | 3238 | 3.45 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CG | O3 | D | 3238 | 3.17 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CD | C3 | D | 3238 | 3.86 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CD | O3 | D | 3238 | 3.01 | van der Waals | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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4 | 1QDC | MAN(APLHA1-6)MAN(ALPHA1-O)METHYL CONCANAVALIN A COMPLEX | X-RAY | 2.00 | 0.175
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLLLLLLH
+1w
> Sequence: YNGLYADGR
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MAN /(238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 12 | TYR | CD2 | C6 | A | 238 | 3.81 | van der Waals | A | No SSE | 12 | TYR | CD2 | O4 | A | 238 | 3.73 | van der Waals | A | No SSE | 12 | TYR | CE2 | C6 | A | 238 | 3.93 | van der Waals | A | No SSE | 14 | ASN | CG | O4 | A | 238 | 3.76 | van der Waals | A | No SSE | 14 | ASN | OD1 | O4 | A | 238 | 3.75 | H.Bond | A | No SSE | 14 | ASN | ND2 | O4 | A | 238 | 2.93 | H.Bond | A | No SSE | 98 | GLY | N | O6 | A | 238 | 3.49 | H.Bond | A | No SSE | 98 | GLY | CA | O2 | A | 238 | 3.53 | van der Waals | A | No SSE | 98 | GLY | CA | O6 | A | 238 | 3.45 | van der Waals | A | No SSE | 98 | GLY | C | O6 | A | 238 | 3.58 | van der Waals | A | No SSE | 99 | LEU | N | C1 | A | 238 | 3.77 | H.Bond | A | No SSE | 99 | LEU | N | C5 | A | 238 | 3.99 | H.Bond | A | No SSE | 99 | LEU | N | C6 | A | 238 | 3.93 | H.Bond | A | No SSE | 99 | LEU | N | O2 | A | 238 | 3.78 | H.Bond | A | No SSE | 99 | LEU | N | O5 | A | 238 | 2.97 | H.Bond | A | No SSE | 99 | LEU | N | O6 | A | 238 | 3.09 | H.Bond | A | No SSE | 99 | LEU | CA | O5 | A | 238 | 3.65 | van der Waals | A | No SSE | 99 | LEU | C | O6 | A | 238 | 3.99 | van der Waals | A | No SSE | 99 | LEU | CB | C1 | A | 238 | 3.72 | van der Waals | A | No SSE | 99 | LEU | CB | O5 | A | 238 | 3.19 | van der Waals | A | No SSE | 100 | TYR | N | C6 | A | 238 | 3.83 | H.Bond | A | No SSE | 100 | TYR | N | O6 | A | 238 | 3.06 | H.Bond | A | No SSE | 100 | TYR | CA | O6 | A | 238 | 3.83 | van der Waals | A | No SSE | 100 | TYR | O | O6 | A | 238 | 3.57 | H.Bond | A | No SSE | 100 | TYR | CB | O6 | A | 238 | 3.81 | van der Waals | A | No SSE | 100 | TYR | CD2 | C6 | A | 238 | 3.8 | van der Waals | A | No SSE | 207 | ALA | CB | C6 | A | 238 | 3.79 | van der Waals | A | No SSE | 207 | ALA | CB | O6 | A | 238 | 3.36 | van der Waals | A | No SSE | 208 | ASP | CG | C4 | A | 238 | 3.93 | van der Waals | A | No SSE | 208 | ASP | CG | O4 | A | 238 | 3.51 | van der Waals | A | No SSE | 208 | ASP | CG | O6 | A | 238 | 3.7 | van der Waals | A | No SSE | 208 | ASP | OD1 | C4 | A | 238 | 3.42 | van der Waals | A | No SSE | 208 | ASP | OD1 | C6 | A | 238 | 3.81 | van der Waals | A | No SSE | 208 | ASP | OD1 | O4 | A | 238 | 2.62 | H.Bond | A | No SSE | 208 | ASP | OD1 | O6 | A | 238 | 3.83 | H.Bond | A | No SSE | 208 | ASP | OD2 | C4 | A | 238 | 3.66 | van der Waals | A | No SSE | 208 | ASP | OD2 | C6 | A | 238 | 3.7 | van der Waals | A | No SSE | 208 | ASP | OD2 | O4 | A | 238 | 3.71 | H.Bond | A | No SSE | 208 | ASP | OD2 | O6 | A | 238 | 2.91 | H.Bond | A | 227-229 H: 5 | 227 | GLY | CA | C4 | A | 238 | 3.84 | van der Waals | A | 227-229 H: 5 | 227 | GLY | CA | O2 | A | 238 | 3.79 | van der Waals | A | 227-229 H: 5 | 227 | GLY | CA | O3 | A | 238 | 3.4 | van der Waals | A | 227-229 H: 5 | 227 | GLY | C | O3 | A | 238 | 3.59 | van der Waals | A | 227-229 H: 5 | 228 | ARG | N | C3 | A | 238 | 3.86 | H.Bond | A | 227-229 H: 5 | 228 | ARG | N | C4 | A | 238 | 3.75 | H.Bond | A | 227-229 H: 5 | 228 | ARG | N | O3 | A | 238 | 2.82 | H.Bond | A | 227-229 H: 5 | 228 | ARG | N | O4 | A | 238 | 3.36 | H.Bond | A | 227-229 H: 5 | 228 | ARG | CA | O3 | A | 238 | 3.76 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CA | O4 | A | 238 | 3.83 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CB | O3 | A | 238 | 3.49 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CB | O4 | A | 238 | 3.76 | van der Waals | A | 227-229 H: 5 | 228 | ARG | CG | O3 | A | 238 | 3.06 | van der Waals | A | Water | 276 | HOH | O | C2 | A | 238 | 3.64 | van der Waals | A | Water | 276 | HOH | O | C3 | A | 238 | 3.47 | van der Waals | A | Water | 276 | HOH | O | O3 | A | 238 | 2.99 | H.Bond | |
| 2 / B |
> Structure: LLLLLLLH
> Sequence: YNGLYADGR
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MAN /(1238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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B | No SSE | 12 | TYR | CD2 | C6 | B | 1238 | 3.79 | van der Waals | B | No SSE | 12 | TYR | CD2 | O4 | B | 1238 | 3.88 | van der Waals | B | No SSE | 12 | TYR | CE2 | C6 | B | 1238 | 3.84 | van der Waals | B | No SSE | 14 | ASN | CG | O4 | B | 1238 | 3.73 | van der Waals | B | No SSE | 14 | ASN | OD1 | O4 | B | 1238 | 3.69 | H.Bond | B | No SSE | 14 | ASN | ND2 | O4 | B | 1238 | 2.94 | H.Bond | B | No SSE | 98 | GLY | N | O6 | B | 1238 | 3.4 | H.Bond | B | No SSE | 98 | GLY | CA | O2 | B | 1238 | 3.47 | van der Waals | B | No SSE | 98 | GLY | CA | O6 | B | 1238 | 3.37 | van der Waals | B | No SSE | 98 | GLY | C | O2 | B | 1238 | 3.96 | van der Waals | B | No SSE | 98 | GLY | C | O6 | B | 1238 | 3.5 | van der Waals | B | No SSE | 99 | LEU | N | C1 | B | 1238 | 3.73 | H.Bond | B | No SSE | 99 | LEU | N | C6 | B | 1238 | 3.97 | H.Bond | B | No SSE | 99 | LEU | N | O2 | B | 1238 | 3.59 | H.Bond | B | No SSE | 99 | LEU | N | O5 | B | 1238 | 3 | H.Bond | B | No SSE | 99 | LEU | N | O6 | B | 1238 | 3.09 | H.Bond | B | No SSE | 99 | LEU | CA | O5 | B | 1238 | 3.63 | van der Waals | B | No SSE | 99 | LEU | CA | O6 | B | 1238 | 3.99 | van der Waals | B | No SSE | 99 | LEU | C | O6 | B | 1238 | 3.98 | van der Waals | B | No SSE | 99 | LEU | CB | C1 | B | 1238 | 3.59 | van der Waals | B | No SSE | 99 | LEU | CB | O5 | B | 1238 | 3.11 | van der Waals | B | No SSE | 100 | TYR | N | C6 | B | 1238 | 3.86 | H.Bond | B | No SSE | 100 | TYR | N | O6 | B | 1238 | 3.03 | H.Bond | B | No SSE | 100 | TYR | CA | O6 | B | 1238 | 3.79 | van der Waals | B | No SSE | 100 | TYR | C | O6 | B | 1238 | 3.93 | van der Waals | B | No SSE | 100 | TYR | O | O6 | B | 1238 | 3.31 | H.Bond | B | No SSE | 100 | TYR | CB | O6 | B | 1238 | 3.85 | van der Waals | B | No SSE | 100 | TYR | CD2 | C6 | B | 1238 | 3.91 | van der Waals | B | No SSE | 207 | ALA | CB | C6 | B | 1238 | 3.71 | van der Waals | B | No SSE | 207 | ALA | CB | O6 | B | 1238 | 3.36 | van der Waals | B | No SSE | 208 | ASP | CG | C4 | B | 1238 | 3.89 | van der Waals | B | No SSE | 208 | ASP | CG | C6 | B | 1238 | 3.93 | van der Waals | B | No SSE | 208 | ASP | CG | O4 | B | 1238 | 3.45 | van der Waals | B | No SSE | 208 | ASP | CG | O6 | B | 1238 | 3.6 | van der Waals | B | No SSE | 208 | ASP | OD1 | C4 | B | 1238 | 3.36 | van der Waals | B | No SSE | 208 | ASP | OD1 | C6 | B | 1238 | 3.63 | van der Waals | B | No SSE | 208 | ASP | OD1 | O4 | B | 1238 | 2.53 | H.Bond | B | No SSE | 208 | ASP | OD1 | O6 | B | 1238 | 3.77 | H.Bond | B | No SSE | 208 | ASP | OD2 | C4 | B | 1238 | 3.65 | van der Waals | B | No SSE | 208 | ASP | OD2 | C6 | B | 1238 | 3.5 | van der Waals | B | No SSE | 208 | ASP | OD2 | O4 | B | 1238 | 3.68 | H.Bond | B | No SSE | 208 | ASP | OD2 | O6 | B | 1238 | 2.78 | H.Bond | B | 227-229 H: 5 | 227 | GLY | CA | C4 | B | 1238 | 3.96 | van der Waals | B | 227-229 H: 5 | 227 | GLY | CA | O3 | B | 1238 | 3.63 | van der Waals | B | 227-229 H: 5 | 227 | GLY | C | O3 | B | 1238 | 3.84 | van der Waals | B | 227-229 H: 5 | 228 | ARG | N | C3 | B | 1238 | 3.99 | H.Bond | B | 227-229 H: 5 | 228 | ARG | N | C4 | B | 1238 | 3.78 | H.Bond | B | 227-229 H: 5 | 228 | ARG | N | O3 | B | 1238 | 3.05 | H.Bond | B | 227-229 H: 5 | 228 | ARG | N | O4 | B | 1238 | 3.28 | H.Bond | B | 227-229 H: 5 | 228 | ARG | CA | O3 | B | 1238 | 3.97 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CA | O4 | B | 1238 | 3.77 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CB | O3 | B | 1238 | 3.66 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CB | O4 | B | 1238 | 3.68 | van der Waals | B | 227-229 H: 5 | 228 | ARG | CG | O3 | B | 1238 | 3.18 | van der Waals | |
| 3 / C |
> Structure: LLLLLLLH
+2w
> Sequence: YNGLYADGR
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MAN /(2238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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C | No SSE | 12 | TYR | CD2 | C6 | C | 2238 | 3.73 | van der Waals | C | No SSE | 12 | TYR | CE2 | C6 | C | 2238 | 3.77 | van der Waals | C | No SSE | 14 | ASN | CG | O4 | C | 2238 | 3.78 | van der Waals | C | No SSE | 14 | ASN | OD1 | O4 | C | 2238 | 3.74 | H.Bond | C | No SSE | 14 | ASN | ND2 | O4 | C | 2238 | 3 | H.Bond | C | No SSE | 98 | GLY | N | O6 | C | 2238 | 3.42 | H.Bond | C | No SSE | 98 | GLY | CA | O2 | C | 2238 | 3.79 | van der Waals | C | No SSE | 98 | GLY | CA | O6 | C | 2238 | 3.5 | van der Waals | C | No SSE | 98 | GLY | C | O6 | C | 2238 | 3.7 | van der Waals | C | No SSE | 99 | LEU | N | C1 | C | 2238 | 3.84 | H.Bond | C | No SSE | 99 | LEU | N | O2 | C | 2238 | 3.85 | H.Bond | C | No SSE | 99 | LEU | N | O5 | C | 2238 | 3.1 | H.Bond | C | No SSE | 99 | LEU | N | O6 | C | 2238 | 3.31 | H.Bond | C | No SSE | 99 | LEU | CA | O5 | C | 2238 | 3.76 | van der Waals | C | No SSE | 99 | LEU | CB | C1 | C | 2238 | 3.69 | van der Waals | C | No SSE | 99 | LEU | CB | O5 | C | 2238 | 3.27 | van der Waals | C | No SSE | 100 | TYR | N | C6 | C | 2238 | 3.96 | H.Bond | C | No SSE | 100 | TYR | N | O6 | C | 2238 | 3.15 | H.Bond | C | No SSE | 100 | TYR | CA | O6 | C | 2238 | 3.8 | van der Waals | C | No SSE | 100 | TYR | C | O6 | C | 2238 | 3.94 | van der Waals | C | No SSE | 100 | TYR | O | O6 | C | 2238 | 3.4 | H.Bond | C | No SSE | 100 | TYR | CB | O6 | C | 2238 | 3.77 | van der Waals | C | No SSE | 100 | TYR | CD2 | C6 | C | 2238 | 3.93 | van der Waals | C | No SSE | 207 | ALA | CB | C6 | C | 2238 | 3.75 | van der Waals | C | No SSE | 207 | ALA | CB | O6 | C | 2238 | 3.35 | van der Waals | C | No SSE | 208 | ASP | CG | C4 | C | 2238 | 3.94 | van der Waals | C | No SSE | 208 | ASP | CG | C6 | C | 2238 | 3.91 | van der Waals | C | No SSE | 208 | ASP | CG | O4 | C | 2238 | 3.43 | van der Waals | C | No SSE | 208 | ASP | CG | O6 | C | 2238 | 3.53 | van der Waals | C | No SSE | 208 | ASP | OD1 | C4 | C | 2238 | 3.45 | van der Waals | C | No SSE | 208 | ASP | OD1 | C5 | C | 2238 | 3.99 | van der Waals | C | No SSE | 208 | ASP | OD1 | C6 | C | 2238 | 3.46 | van der Waals | C | No SSE | 208 | ASP | OD1 | O4 | C | 2238 | 2.61 | H.Bond | C | No SSE | 208 | ASP | OD1 | O6 | C | 2238 | 3.55 | H.Bond | C | No SSE | 208 | ASP | OD2 | C4 | C | 2238 | 3.66 | van der Waals | C | No SSE | 208 | ASP | OD2 | C6 | C | 2238 | 3.61 | van der Waals | C | No SSE | 208 | ASP | OD2 | O4 | C | 2238 | 3.62 | H.Bond | C | No SSE | 208 | ASP | OD2 | O6 | C | 2238 | 2.85 | H.Bond | C | 227-229 H: 5 | 227 | GLY | CA | C4 | C | 2238 | 3.9 | van der Waals | C | 227-229 H: 5 | 227 | GLY | CA | O3 | C | 2238 | 3.67 | van der Waals | C | 227-229 H: 5 | 227 | GLY | C | O3 | C | 2238 | 3.85 | van der Waals | C | 227-229 H: 5 | 227 | GLY | C | O4 | C | 2238 | 3.86 | van der Waals | C | 227-229 H: 5 | 228 | ARG | N | C3 | C | 2238 | 3.95 | H.Bond | C | 227-229 H: 5 | 228 | ARG | N | C4 | C | 2238 | 3.71 | H.Bond | C | 227-229 H: 5 | 228 | ARG | N | O3 | C | 2238 | 3.03 | H.Bond | C | 227-229 H: 5 | 228 | ARG | N | O4 | C | 2238 | 3.16 | H.Bond | C | 227-229 H: 5 | 228 | ARG | CA | O3 | C | 2238 | 3.91 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CA | O4 | C | 2238 | 3.65 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CB | O3 | C | 2238 | 3.57 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CB | O4 | C | 2238 | 3.68 | van der Waals | C | 227-229 H: 5 | 228 | ARG | CG | O3 | C | 2238 | 3.06 | van der Waals | C | Water | 2287 | HOH | O | C2 | C | 2238 | 3.7 | van der Waals | C | Water | 2287 | HOH | O | C3 | C | 2238 | 3.56 | van der Waals | C | Water | 2287 | HOH | O | O3 | C | 2238 | 2.78 | H.Bond | C | Water | 2297 | HOH | O | C2 | C | 2238 | 3.84 | van der Waals | C | Water | 2297 | HOH | O | O2 | C | 2238 | 2.65 | H.Bond | C | Water | 2297 | HOH | O | O3 | C | 2238 | 3.9 | H.Bond | |
| 4 / D |
> Structure: LLLLLLLH
> Sequence: YNGLYADGR
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MAN /(3238) |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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D | No SSE | 12 | TYR | CD2 | C6 | D | 3238 | 3.71 | van der Waals | D | No SSE | 12 | TYR | CD2 | O4 | D | 3238 | 3.9 | van der Waals | D | No SSE | 12 | TYR | CE2 | C6 | D | 3238 | 3.72 | van der Waals | D | No SSE | 14 | ASN | CG | O4 | D | 3238 | 3.85 | van der Waals | D | No SSE | 14 | ASN | OD1 | O4 | D | 3238 | 3.83 | H.Bond | D | No SSE | 14 | ASN | ND2 | O4 | D | 3238 | 3.04 | H.Bond | D | No SSE | 98 | GLY | N | O6 | D | 3238 | 3.4 | H.Bond | D | No SSE | 98 | GLY | CA | O2 | D | 3238 | 3.42 | van der Waals | D | No SSE | 98 | GLY | CA | O6 | D | 3238 | 3.33 | van der Waals | D | No SSE | 98 | GLY | C | O2 | D | 3238 | 3.99 | van der Waals | D | No SSE | 98 | GLY | C | O5 | D | 3238 | 3.91 | van der Waals | D | No SSE | 98 | GLY | C | O6 | D | 3238 | 3.48 | van der Waals | D | No SSE | 99 | LEU | N | C1 | D | 3238 | 3.68 | H.Bond | D | No SSE | 99 | LEU | N | C5 | D | 3238 | 3.98 | H.Bond | D | No SSE | 99 | LEU | N | C6 | D | 3238 | 3.97 | H.Bond | D | No SSE | 99 | LEU | N | O2 | D | 3238 | 3.68 | H.Bond | D | No SSE | 99 | LEU | N | O5 | D | 3238 | 2.92 | H.Bond | D | No SSE | 99 | LEU | N | O6 | D | 3238 | 3.15 | H.Bond | D | No SSE | 99 | LEU | CA | O5 | D | 3238 | 3.65 | van der Waals | D | No SSE | 99 | LEU | CB | C1 | D | 3238 | 3.74 | van der Waals | D | No SSE | 99 | LEU | CB | O5 | D | 3238 | 3.21 | van der Waals | D | No SSE | 100 | TYR | N | C6 | D | 3238 | 3.97 | H.Bond | D | No SSE | 100 | TYR | N | O6 | D | 3238 | 3.14 | H.Bond | D | No SSE | 100 | TYR | CA | O6 | D | 3238 | 3.87 | van der Waals | D | No SSE | 100 | TYR | O | O6 | D | 3238 | 3.43 | H.Bond | D | No SSE | 100 | TYR | CB | O6 | D | 3238 | 3.88 | van der Waals | D | No SSE | 100 | TYR | CD2 | C6 | D | 3238 | 3.9 | van der Waals | D | No SSE | 207 | ALA | CB | C6 | D | 3238 | 3.81 | van der Waals | D | No SSE | 207 | ALA | CB | O6 | D | 3238 | 3.35 | van der Waals | D | No SSE | 208 | ASP | CG | C4 | D | 3238 | 3.88 | van der Waals | D | No SSE | 208 | ASP | CG | C6 | D | 3238 | 3.99 | van der Waals | D | No SSE | 208 | ASP | CG | O4 | D | 3238 | 3.4 | van der Waals | D | No SSE | 208 | ASP | CG | O6 | D | 3238 | 3.61 | van der Waals | D | No SSE | 208 | ASP | OD1 | C4 | D | 3238 | 3.45 | van der Waals | D | No SSE | 208 | ASP | OD1 | C6 | D | 3238 | 3.75 | van der Waals | D | No SSE | 208 | ASP | OD1 | O4 | D | 3238 | 2.58 | H.Bond | D | No SSE | 208 | ASP | OD1 | O6 | D | 3238 | 3.83 | H.Bond | D | No SSE | 208 | ASP | OD2 | C4 | D | 3238 | 3.53 | van der Waals | D | No SSE | 208 | ASP | OD2 | C6 | D | 3238 | 3.45 | van der Waals | D | No SSE | 208 | ASP | OD2 | O4 | D | 3238 | 3.53 | H.Bond | D | No SSE | 208 | ASP | OD2 | O6 | D | 3238 | 2.72 | H.Bond | D | 227-229 H: 5 | 227 | GLY | CA | C4 | D | 3238 | 3.86 | van der Waals | D | 227-229 H: 5 | 227 | GLY | CA | O3 | D | 3238 | 3.65 | van der Waals | D | 227-229 H: 5 | 227 | GLY | C | O3 | D | 3238 | 3.87 | van der Waals | D | 227-229 H: 5 | 227 | GLY | C | O4 | D | 3238 | 3.9 | van der Waals | D | 227-229 H: 5 | 228 | ARG | N | C3 | D | 3238 | 3.98 | H.Bond | D | 227-229 H: 5 | 228 | ARG | N | C4 | D | 3238 | 3.7 | H.Bond | D | 227-229 H: 5 | 228 | ARG | N | O3 | D | 3238 | 3.1 | H.Bond | D | 227-229 H: 5 | 228 | ARG | N | O4 | D | 3238 | 3.12 | H.Bond | D | 227-229 H: 5 | 228 | ARG | CA | O4 | D | 3238 | 3.67 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CB | O3 | D | 3238 | 3.65 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CB | O4 | D | 3238 | 3.58 | van der Waals | D | 227-229 H: 5 | 228 | ARG | CG | O3 | D | 3238 | 3.17 | van der Waals | |
Nbr of Motifs per PDB entry | PDB Entry | Title | Determination Method | Resolution | R-Factor |
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1 | 2FMD | Structural basis of carbohydrate recognition by Bowringia milbraedii seed agglutinin | X-RAY | 1.90 | 0.186
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| Motif No./Chain | Motif | Bound Ligand /(Nbr. in PDB) | Show Details |
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| 1 / A |
> Structure: LLHLHLLL
+2w
> Sequence: ADGRYNGQY
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MAN /(241) |
[+] |
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> Graphics rep1:
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[+] |
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> Graphics rep2:
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[+] |
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Protein Chain | Prot SSE | Res Nbr | Res Name | RsAt.Name | LgAt.Name |
Lg Chain | Lg Nbr | Bnd Len | Bnd Type |
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A | No SSE | 85 | ALA | CB | C6 | A | 241 | 3.7 | van der Waals | A | No SSE | 85 | ALA | CB | O6 | A | 241 | 3.25 | van der Waals | A | No SSE | 86 | ASP | CG | C4 | A | 241 | 3.76 | van der Waals | A | No SSE | 86 | ASP | CG | O4 | A | 241 | 3.34 | van der Waals | A | No SSE | 86 | ASP | CG | O6 | A | 241 | 3.45 | van der Waals | A | No SSE | 86 | ASP | OD1 | C4 | A | 241 | 3.29 | van der Waals | A | No SSE | 86 | ASP | OD1 | C6 | A | 241 | 3.65 | van der Waals | A | No SSE | 86 | ASP | OD1 | O4 | A | 241 | 2.47 | H.Bond | A | No SSE | 86 | ASP | OD1 | O6 | A | 241 | 3.58 | H.Bond | A | No SSE | 86 | ASP | OD2 | C4 | A | 241 | 3.46 | van der Waals | A | No SSE | 86 | ASP | OD2 | C6 | A | 241 | 3.65 | van der Waals | A | No SSE | 86 | ASP | OD2 | O4 | A | 241 | 3.54 | H.Bond | A | No SSE | 86 | ASP | OD2 | O6 | A | 241 | 2.76 | H.Bond | A | 104-108 H: 5 | 105 | GLY | CA | O3 | A | 241 | 3.58 | van der Waals | A | 104-108 H: 5 | 105 | GLY | C | O3 | A | 241 | 3.67 | van der Waals | A | 104-108 H: 5 | 106 | ARG | N | C3 | A | 241 | 3.86 | H.Bond | A | 104-108 H: 5 | 106 | ARG | N | C4 | A | 241 | 3.8 | H.Bond | A | 104-108 H: 5 | 106 | ARG | N | O3 | A | 241 | 2.82 | H.Bond | A | 104-108 H: 5 | 106 | ARG | N | O4 | A | 241 | 3.41 | H.Bond | A | 104-108 H: 5 | 106 | ARG | CA | O3 | A | 241 | 3.72 | van der Waals | A | 104-108 H: 5 | 106 | ARG | CA | O4 | A | 241 | 3.71 | van der Waals | A | 104-108 H: 5 | 106 | ARG | CB | O3 | A | 241 | 3.44 | van der Waals | A | 104-108 H: 5 | 106 | ARG | CB | O4 | A | 241 | 3.47 | van der Waals | A | 104-108 H: 5 | 106 | ARG | CG | O3 | A | 241 | 3.33 | van der Waals | A | 104-108 H: 5 | 106 | ARG | CD | O3 | A | 241 | 3.91 | van der Waals | A | No SSE | 131 | TYR | CD2 | C6 | A | 241 | 3.6 | van der Waals | A | No SSE | 131 | TYR | CD2 | O4 | A | 241 | 3.71 | van der Waals | A | No SSE | 131 | TYR | CE2 | C5 | A | 241 | 3.8 | van der Waals | A | No SSE | 131 | TYR | CE2 | C6 | A | 241 | 3.59 | van der Waals | A | 133-137 H: 5 | 133 | ASN | CG | O4 | A | 241 | 3.66 | van der Waals | A | 133-137 H: 5 | 133 | ASN | OD1 | O4 | A | 241 | 3.66 | H.Bond | A | 133-137 H: 5 | 133 | ASN | ND2 | C4 | A | 241 | 3.93 | H.Bond | A | 133-137 H: 5 | 133 | ASN | ND2 | O4 | A | 241 | 2.84 | H.Bond | A | No SSE | 217 | GLY | N | O6 | A | 241 | 3.3 | H.Bond | A | No SSE | 217 | GLY | CA | O2 | A | 241 | 3.64 | van der Waals | A | No SSE | 217 | GLY | CA | O6 | A | 241 | 3.19 | van der Waals | A | No SSE | 217 | GLY | C | O6 | A | 241 | 3.44 | van der Waals | A | No SSE | 218 | GLN | N | C1 | A | 241 | 3.98 | H.Bond | A | No SSE | 218 | GLN | N | C5 | A | 241 | 3.97 | H.Bond | A | No SSE | 218 | GLN | N | C6 | A | 241 | 3.79 | H.Bond | A | No SSE | 218 | GLN | N | O2 | A | 241 | 3.71 | H.Bond | A | No SSE | 218 | GLN | N | O5 | A | 241 | 3.1 | H.Bond | A | No SSE | 218 | GLN | N | O6 | A | 241 | 2.99 | H.Bond | A | No SSE | 218 | GLN | CA | O5 | A | 241 | 3.75 | van der Waals | A | No SSE | 218 | GLN | CB | C1 | A | 241 | 3.84 | van der Waals | A | No SSE | 218 | GLN | CB | O5 | A | 241 | 3.21 | van der Waals | A | No SSE | 219 | TYR | N | C6 | A | 241 | 3.84 | H.Bond | A | No SSE | 219 | TYR | N | O6 | A | 241 | 3.16 | H.Bond | A | No SSE | 219 | TYR | CA | O6 | A | 241 | 3.96 | van der Waals | A | No SSE | 219 | TYR | O | O6 | A | 241 | 3.71 | H.Bond | A | No SSE | 219 | TYR | CB | O6 | A | 241 | 3.98 | van der Waals | A | No SSE | 219 | TYR | CD2 | C6 | A | 241 | 3.91 | van der Waals | A | Water | 373 | HOH | O | C2 | A | 241 | 3.74 | van der Waals | A | Water | 373 | HOH | O | O2 | A | 241 | 2.71 | H.Bond | A | Water | 373 | HOH | O | O3 | A | 241 | 3.56 | H.Bond | A | Water | 428 | HOH | O | O3 | A | 241 | 3.68 | H.Bond | |