GlcSFMs: Glucides Binding Structural & Functional Motifs - v. β November 2015.
© University Dr Tahar Moulay, Saida.


Project realized by:Zein Mehdi (in his project of MSc in Biology, 2014-2015)

Proposed & supervised by: Dr. Abdelkrim Rachedi, e-mail: rachedi@bioinformaticstools.org

Glucides Binding Structural & Functional Motifs
- GlcSFMs database-
Find GlcSFMs by Ligands:
BGC   G6P   NAG   2FP   FBP   F6P   MDM   MMA   MAN   LBT   TDG   LAT   R5P   RIP   0MK   GAL   NGA   IUG   ARB   ARA   ALL   AOS   NA1   3BU   A6P   5RP   CAP   RUB   XLS   XYS   XUL   XYL   MBG   PAN   
Find GlcSFMs by PDB entries:
2CDB   1CQ1   1UP6   3ACI   4QFH   4EM5   1BG3   1ZM1   1GPE   9LYZ   3MMT   1ZAI   2QDG   1FDJ   3VKV   3PQD   1HOX   3VPH   1T10   2CXS   4K1Y   1NIV   2EF6   4GX7   4OIZ   1LOG   1KUJ   1QDO   1QDC   2FMD   4GA9   4OJO   4BME   3AP4   1PV7   2NN8   4NO4   4YM3   3VT0   2ZGO   4ADU   1ZHA   1DBP   1DRK   4Q0U   3WW1   4DUX   4Q0P   1OGD   1DRJ   4LO1   4XBQ   4XBN   4I4V   4G9N   3COR   1AFA   3ZGG   3ZGF   1CIW   3TB6   1KOJ   1MMZ   4QDP   1BAP   6ABP   2ARC   3A22   1ABE   4RXT   1RPJ   3M0M   3PH4   4GJJ   2I57   1HKI   3WW4   1HKJ   3FY1   2VVO   3OVQ   3GND   2VVP   1TKU   4P77   1RBL   1RXO   1RCX   2ISS   4M8L   8XIA   3XIS   4XIS   4GNA   1XLM   2XIS   1XIC   1XIG   1XII   5XIA   
Finding GlcSFMs for the glucide '5RP' ...
Ligand: IDFull NameFormula Chemistry
5RPRIBULOSE-5-PHOSPHATEC5 H11 O8 P5RP
There are 37 GlcSFMs:
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
23OVQCrytal Structure of hRPE and D-Ribulose-5-Phospate ComplexX-RAY2.000.149
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LSSSLLLLLSLLSH +4w
  > Sequence: SHDMHMMPGFGGDGGSGS 		5RP
/(230)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LLSSSLLLLLSLLSH +3w
  > Sequence: SLHDMHMMPGFGGDGGSGS 		5RP
/(230)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
203GNDCrystal Structure of E. coli LsrF in complex with Ribulose-5-phosphateX-RAY2.900.197
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / C   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / D   > Structure: LHSSSLSH
  > Sequence: DHYRQKGMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / E   > Structure: LHSLSH
  > Sequence: DHYFRGMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
6 / F   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
7 / G   > Structure: LHSSSLLSLH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
8 / H   > Structure: LHSSLLSH
  > Sequence: DHYFRQGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
9 / I   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
10 / J   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
11 / K   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
12 / L   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
13 / M   > Structure: LHSSSLLSH +1w
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
14 / N   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
15 / O   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
16 / P   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
17 / Q   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
18 / R   > Structure: LHSSSSLLSH
  > Sequence: DHYFRQKAGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
19 / S   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
20 / T   > Structure: LHSSSLLSH
  > Sequence: DHYFRQKGGDMGR 		5RP
/(984)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
52VVPCRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE ISOMERASE B IN COMPLEX WITH ITS SX-RAY1.650.168
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: HHSLLHH +6w
  > Sequence: DHAYGGSGNGER 		5RP
/(300)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: HHSLLHL +6w
  > Sequence: DHAYGGSGNGER 		5RP
/(300)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / C   > Structure: HSLLHL +6w
  > Sequence: DHAGGSGNGER 		5RP
/(300)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
4 / D   > Structure: HHSLLHL +6w
  > Sequence: DHAYGGSGNGER 		5RP
/(300)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
5 / E   > Structure: HHSLLHL +5w
  > Sequence: DHAYGGSGGER 		5RP
/(300)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
21TKUCrystal Structure of 3,4-Dihydroxy-2-butanone 4-phosphate Synthase of Candida albicans in complex wiX-RAY1.660.184
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SSLSLHS +12w
  > Sequence: DCTLRGHTIE 		5RP
/(701)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: SSLLSLHS +11w
  > Sequence: DCTYLRGHTIE 		5RP
/(801)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
24P77Structure of ribB complexed with substrate Ru5PX-RAY2.040.176
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LLLSSLLLHS +3w
  > Sequence: REEDCTFRGHTE 		5RP
/(301)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LLLSSLLLHS +4w
  > Sequence: REEDCTFRGHTLE 		5RP
/(500)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
32ISSStructure of the PLP synthase Holoenzyme from Thermotoga maritimaX-RAY2.900.213
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: SSHSSLSLLLLLSH
  > Sequence: DMPKDVREAGGGFGS 		5RP
/(294)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: SSHSSLSLLLLLSH
  > Sequence: DMPKDVREAGGGFGS 		5RP
/(294)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / C   > Structure: SSHSSLSLLLLLSH
  > Sequence: DMPKDVREAGGGFGS 		5RP
/(294)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
Nbr of Motifs
per PDB entry		 PDB EntryTitleDetermination MethodResolutionR-Factor
34M8Lcrystal structure of RpiA-R5P complexX-RAY2.370.239
Motif No./ChainMotifBound Ligand
/(Nbr. in PDB)		Show Details
1 / A   > Structure: LHSLLLLLLLLHH +5w
  > Sequence: TGSTDGADKGGGAAEK 		5RP
/(301)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
2 / B   > Structure: LHSLLLLLLLLHH +5w
  > Sequence: TGSTDGADKGGGAAEK 		5RP
/(301)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]
3 / C   > Structure: LHSLLLLLLLLHH +3w
  > Sequence: TGSTDGADKGGGAAEK 		5RP
/(301)		 [+]
  > Graphics rep1: [+]
  > Graphics rep2: [+]